Rchr
J-GLOBAL ID:201001025273786718
Update date: Apr. 05, 2024
Yasukazu Nakamura
ナカムラ ヤスカズ | Yasukazu Nakamura
Affiliation and department:
Job title:
Professor
Other affiliations (2):
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The Graduate University for Advanced Studies
Genetics Program, Graduate Institute for Advanced Studies
Professor
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Kazusa DNA Research Institute
Facility for Genome Informatics
Visiting Scientist
Homepage URL (1):
http://ynlab.info/yn/
Research field (3):
Biological, health, and medical informatics
, Veterinary medicine
, Genomics
Research theme for competitive and other funds (21):
- 2023 - 2028 翻訳開始因子DAP5を軸とした腎糸球体障害の病態理解と応用
- 2022 - 2028 Platform for Advanced Genome Science
- 2022 - 2025 ベンサミアナタバコのゲノム解析に基づく植物の接木分子基盤解明
- 2020 - 2021 広島から世界最先端のバイオエコノミー社会を実現するBio×Digital Transformation(バイオDX)産学共創拠点
- 2017 - 2021 データサイエンスを加速させる微生物統合データベースの高度実用化開発
- 2017 - 2021 個体ゲノム時代に向けた植物ゲノム情報解析基盤の構築
- 2017 - 2021 ゲノム不安定性疾患群を中心とした希少難治性疾患の次世代マルチオミクス診断拠点構築
- 2016 - 2021 先進ゲノム解析研究推進プラットフォーム
- 2015 - 2018 Multidimensional Exploration of Logics of Plant Development
- 2013 - 2018 Evolutionary and molecuar genetic studies to logics in plant development
- 2011 - 2017 ゲノム情報に基づく植物データベースの統合
- 2013 - 2017 陸上植物進化を基軸とした発生ロジックの解明
- 2010 - 2016 Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- 2014 - 2016 ゲノム不安定性を示す難治性遺伝性疾患群の症例収集とゲノム・分子機能解析
- 2010 - 2016 超大容量ゲノム・多元軸表現型データの統計情報解析による遺伝機能システム学
- 2010 - 2016 ゲノム科学の総合的推進に向けた大規模ゲノム情報生産・高度情報解析支援
- 2016 - 2016 NIESコレクションのシアノバクテリアのゲノム情報整備
- 2014 - 2016 ゲノム・メタゲノム情報統合による微生物DBの超高度化推進
- 2006 - 2010 植物及び植物関連微生物のゲノム情報データベースの統合と高度化
- 2005 - 2009 Comprehensive analysis of interactions between plants and microbes
- 2005 - 2008 Comprehensive analysis of characteristic sequence patterns among protein-coding regions
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Papers (189):
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Hiroto Toyoda, Akiyoshi Tani, Yuko Goto-Koshino, Tomoki Motegi, Mika Sakamoto, Takako Mochizuki, Kei Harada, Tetsuya Kobayashi, Asuka Setoguchi, Yohei Shizuta, et al. Gene expression profiles associated with early relapse during first remission induction in canine multicentric high-grade B-cell lymphoma. The Journal of veterinary medical science. 2024. 86. 1. 18-27
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Takeshi Ara, Yuichi Kodama, Toshiaki Tokimatsu, Asami Fukuda, Takehide Kosuge, Jun Mashima, Yasuhiro Tanizawa, Tomoya Tanjo, Osamu Ogasawara, Takatomo Fujisawa, et al. DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata. Nucleic acids research. 2024. 52. D1. D67-D71
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Chihiro Furumizu, Yasuhiro Tanizawa, Yasukazu Nakamura. Genome Annotation Matters: From Genes to Phylogenetic Inferences. Plant & cell physiology. 2023
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Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Goro Tanifuji, Ryoma Kamikawa, Yasukazu Nakamura. A practical assembly guideline for genomes with various levels of heterozygosity. Briefings in bioinformatics. 2023. 24. 6
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Ken-ichi Kurotani, Hideki Hirakawa, Kenta Shirasawa, Koya Tagiri, Moe Mori, Yasunori Ichihashi, Takamasa Suzuki, Yasuhiro Tanizawa, Yasukazu Nakamura, Sachiko Isobe, et al. Establishing a comprehensive web-based analysis platform for Nicotiana benthamiana genome and transcriptome. bioRxiv. 2023
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MISC (272):
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Ken-Ichi Kurotani, Hideki Hirakawa, Kenta Shirasawa, Yasuhiro Tanizawa, Yasukazu Nakamura, Sachiko Isobe, Michitaka Notaguchi. Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms. Plant & cell physiology. 2023. 64. 2. 248-257
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森 宙史, 藤澤 貴智, 東 光一, 中村 保一, 山田 拓司, 松井 求, 内山 郁夫. 微生物バイオインフォマティクスの最前線 マイクロバイオーム研究を先導するハブを目指したMicrobiome Datahubの開発. 日本細菌学雑誌. 2023. 78. 1. 30-30
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望月孝子, 坂本美佳, 谷澤靖洋, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一. A Practical Guide to Genome Assembly with Varied Levels of Heterozygosity. 日本分子生物学会年会プログラム・要旨集(Web). 2023. 46th
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森宙史, 藤澤貴智, 東光一, 中村保一, 山田拓司, 松井求, 内山郁夫. Development of an integrated microbiome database: Microbiome Datahub. 日本細菌学雑誌(Web). 2023. 78. 1
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中村保一. 非モデル生物のシークエンス解析・インフォマティクス解析. 日本植物学会大会研究発表記録(CD-ROM). 2023. 87th
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Lectures and oral presentations (300):
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Advancements in Nucleotide Sequencing and Genome Analysis: Updates from the DNA Data Bank of Japan
(The 8th Big Data Forum for Life and Health Sciences (Beijing) 2023)
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非モデル生物のシークエンス解析・インフォマティクス解析
(日本植物学会大会(札幌)シンポジウム 2023)
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DNA Data Bank of Japan update report
(The 19th Asian Bioinformatics Consortium Symposium 2022)
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第3回コンパニオンアニマルのゲノム医療研究会(主催)
(第3回コンパニオンアニマルのゲノム医療研究会 2022)
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生命情報科学による高度先進獣医療
(千葉市科学館 大人が楽しむ科学教室2022 2022)
more...
Education (3):
- 1994 - 1996 The Graduate University for Advanced Studies Faculty of Lifescience Department of Genetics
- 1989 - 1991 Kyoto University Graduate School of Agriculture Department of Agricultual Technology
- 1985 - 1989 Shinshu University Faculty of Agriculture Department of Agricultural Technology
Professional career (1):
Work history (7):
- 2009/01 - 現在 Kazusa DNA Research Institute Visiting Scientist
- 2009/01 - 現在 The Graduate University for Advanced Studies School of Life Science Department of Genetics Professor
- 2009/01 - 現在 National Institute of Genetics Genome Informatics Laboratory Professor
- 2006/04 - 2008/12 Kazusa DNA Research Institute Laboratory of Plant Genome Informatics Head of Laboratory
- 2003/04 - 2008/12 The University of Tokyo Graduate School of Frontier Sciences Department of Computational Biology Visiting Associate Professor
- 2001/04 - 2006/03 Kazusa DNA Research Institute Senior Research Scientist
- 1996/04 - 2001/03 Kazusa DNA Research Institute Scientist
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Committee career (5):
- 2023/05 - 現在 The Genome Taxonomy Database (GTDB) Scientific Advisory Board member
- 2021/12 - 現在 NARO Core Technology Research Headquarters External Review Committee Member
- 2020/01 - 現在 China National Genomics Data Center's Scientific Advisory Board Scientific Advisor
- 2019/04 - 現在 RIKEN BioResource Research Center Resource Committee of Information
- 2018/04 - 現在 National BioResource Project - Algae Steering committee member
Association Membership(s) (3):
Japanese Society for Bioinformatics
, Society of Genome Microbiology, Japan
, The Molecular Biology Society of Japan
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