Yasukazu Nakamura

ナカムラヤスカズ | Yasukazu Nakamura

Affiliation and department：
Job title： Professor
Other affiliations (2)：

The Graduate University for Advanced Studies Genetics Program, Graduate Institute for Advanced Studies Professor
Kazusa DNA Research Institute Facility for Genome Informatics Visiting Scientist

Homepage URL (1)： http://ynlab.info/yn/

Research field (3)： Biological, health, and medical informatics , Veterinary medicine , Genomics

Research theme for competitive and other funds (20)：

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Papers (193)：

Ilene Karsch-Mizrachi, Masanori Arita, Tony Burdett, Guy Cochrane, Yasukazu Nakamura, Kim D Pruitt, Valerie A Schneider, On Behalf Of The International Nucleotide Sequence Database Collaboration. The international nucleotide sequence database collaboration (INSDC): enhancing global participation. Nucleic acids research. 2024
Yuki Matsumoto, Claire Yik-Lok Chung, Sachiko Isobe, Mika Sakamoto, Xiao Lin, Ting-Fung Chan, Hideki Hirakawa, Genki Ishihara, Hon-Ming Lam, Shinobu Nakayama, et al. Chromosome-scale assembly with improved annotation provides insights into breed-wide genomic structure and diversity in domestic cats. Journal of advanced research (pre-proof). 2024
Yuichi Kodama, Takeshi Ara, Asami Fukuda, Toshiaki Tokimatsu, Jun Mashima, Takehide Kosuge, Yasuhiro Tanizawa, Tomoya Tanjo, Osamu Ogasawara, Takatomo Fujisawa, et al. DDBJ update in 2024: the DDBJ Group Cloud service for sharing pre-publication data. Nucleic acids research. 2024
Mohamed Elmanzalawi, Takatomo Fujisawa, Hiroshi Mori, Yasukazu Nakamura, Yasuhiro Tanizawa. DFAST_QC: Quality Assessment and Taxonomic Identification Tool for Prokaryotic Genomes. biorxiv (preprint). 2024
Kazumichi Fujiwara, Atsushi Toyoda, Bhim B. Biswa, Takushi Kishida, Momi Tsuruta, Yasukazu Nakamura, Noriko Kimura, Shoko Kawamoto, Yutaka Sato, Toshio Katsuki, et al. Decoding the Centromeric Region with a Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa. bioRxiv (preprint). 2024

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MISC (276)：

神川龍馬, 坂本美佳, 中村保一. ヒト以外の遺伝子に関連する研究光合成能喪失によるゲノム進化:従属栄養性珪藻を例に. 遺伝子医学. 2024. 14. 2
黒谷賢一, 平川英樹, 白澤健太, 田桐昂弥, 森萌恵, 市橋泰範, 鈴木孝征, 谷澤靖洋, 中村保一, 磯部祥子, et al. Establishment of the comprehensive analysis platform for Nicotiana benthamiana genome and transcriptome. 日本植物生理学会年会(Web). 2024. 65th
市原寿子, 山田学, 戸田陽介, 中谷明弘, 山下サマッチャヤー, 清水武彦, 白澤沙知子, 小原光代, 平川英樹, 中村保一, et al. Improvement of Plant GARDEN, a portal site for plant genome information (FY2023, Q4 ver): Development of tools to use evolutionary information. 育種学研究. 2024. 26
望月孝子, 坂本美佳, 谷澤靖洋, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一. A Practical Guide to Genome Assembly with Varied Levels of Heterozygosity. 育種学研究. 2024. 26
中村保一. 非モデル生物のシークエンス解析・インフォマティクス解析. 植物科学の最前線. 2024. 15. B. 43-47

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Lectures and oral presentations (306)：

DDBJ and the INSDC: Shaping the Future of Global Genomic Data Infrastructure
(11th International Conference on Biomedical and Bioinformatics Engineering (ICBBE 2024) 2024)
コンパニオン・アニマルのゲノム医療を目的としたネコとイヌの高精度リファレンスゲノム整備
(かずさDNA研究所・Washoku BioGenome Consortium・PacBioジャパン・トミーデジタルバイオロジー共催ウェビナーシリーズ第4回:『多様な生物のゲノム解析の現状、解析手法の共有』 2024)
DDBJ updates in 2024
(The 9th Big Data Forum for Life Health Sciences and the 21st Asian Bioinformatics Consortium Symposium 2024)
Comprehensive Annotation of Neuropeptides of <i>Gryllus bimaculatus</i>
(International Congress of Entomology 2024)
A Chromosome-Scale Assembly of a Domestic Cat <i>Felis catus</i> of American Shorthair Breed
(The 12th International Conference of Canine and Feline Genetics and Genomics 2024)

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Education (3)：

1994 - 1996 The Graduate University for Advanced Studies Faculty of Lifescience Department of Genetics
1989 - 1991 Kyoto University Graduate School of Agriculture Department of Agricultual Technology
1985 - 1989 Shinshu University Faculty of Agriculture Department of Agricultural Technology

Professional career (1)：

Work history (7)：

2009/01 - 現在 Kazusa DNA Research Institute Visiting Scientist
2009/01 - 現在 The Graduate University for Advanced Studies School of Life Science Department of Genetics Professor
2009/01 - 現在 National Institute of Genetics Genome Informatics Laboratory Professor
2006/04 - 2008/12 Kazusa DNA Research Institute Laboratory of Plant Genome Informatics Head of Laboratory
2003/04 - 2008/12 The University of Tokyo Graduate School of Frontier Sciences Department of Computational Biology Visiting Associate Professor

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Committee career (7)：

2024/05 - 現在 Multiscale and Interdisciplinary Approaches to Investigate Mechanisms of Resilience and Diversification across Wide Ranges of Spatiotemporal Metrics, PRESTO, JST Research Area Advisor
2023/05 - 現在 The Genome Taxonomy Database (GTDB) Scientific Advisory Board member
2021/12 - 現在 NARO Core Technology Research Headquarters External Review Committee Member
2020/01 - 現在 China National Genomics Data Center's Scientific Advisory Board Scientific Advisor
2019/04 - 現在 RIKEN BioResource Research Center Resource Committee of Information

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Association Membership(s) (4)：

Japanese Society for Bioinformatics , Society of Genome Microbiology, Japan , The Molecular Biology Society of Japan , 植物インフォマティクス研究会

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