Sekijima Masakazu

セキジママサカズ | Sekijima Masakazu

Affiliation and department：
Homepage URL (1)： http://www.cbi.c.titech.ac.jp/

Research field (3)： Computational science , Biological, health, and medical informatics , Intelligent informatics

Research keywords (6)：バイオインフォマティクス , ケモインフォマティクス , 計算科学 , 機械学習 , 並列計算 , 生物物理学

Research theme for competitive and other funds (12)：

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Papers (66)：

K. Harini, M. Sekijima, M. Michael Gromiha. PRA-Pred: Structure-based prediction of protein-RNA binding affinity. International Journal of Biological Macromolecules. 2024. 259
Marc F. Lensink, Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato, Charlotte van Noort, Joao M. C. Teixeira, Alexandre M. J. J. Bonvin, Ren Kong, et al. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment. Proteins: Structure, Function, and Bioinformatics. 2023
Daiki Erikawa, Nobuaki Yasuo, Takamasa Suzuki, Shogo Nakamura, Masakazu Sekijima. Gargoyles: An Open Source Graph-Based Molecular Optimization Method Based on Deep Reinforcement Learning. ACS Omega. 2023. 8. 40. 37431-37441
Shunya Makino, Nobuaki Yasuo, Masakazu Sekijima. Predicting Chemical Reaction Product by Graph Transformer. 2023 Congress in Computer Science, Computer Engineering, & Applied Computing (CSCE). 2023
Hayato Fujita, Akihiro Nomura, Toshio Endo, Masakazu Sekijima. Enhancing the Performance of AlphaFold Through Modified Storage Method and Optimization of HHblits on TSUBAME3.0 Supercomputer. 2023 Congress in Computer Science, Computer Engineering, & Applied Computing (CSCE). 2023

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MISC (122)：

Masakazu Sekijima. Efficiency Improvements in Drug Discovery through Machine Learning and the Challenges to Overcome. CBI学会2023年大会予稿集. 2023
Takamasa SUZUKI, Nobuaki YASUO, Sekijima MASAKAZU. Development of hit-to-lead molecular optimization by multi-objective Monte Carlo Tree Search. 2023
牧野峻也, 安尾信明, 関嶋政和. Transformerを用いたグラフ翻訳による分子最適化手法の開発. 情報処理学会第85回全国大会講演論文集. 2023
塩澤理紗, 安尾信明, 関嶋政和. タンパク質のリガンド結合部位の特徴量化手法の改善に関する研究. 情報処理学会第85回全国大会講演論文集. 2023
鈴木敬将, 安尾信明, 関嶋政和. パレート最適化MCTSを用いたde novo分子生成手法の開発. 情報処理学会第85回全国大会講演論文集. 2023

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Patents (2)：

Books (3)：

革新的AI創薬: 医療ビッグデータ、人工知能がもたらす創薬研究の未来像
エヌ・ティー・エス 2022 ISBN:4860437888
Advances in Parallel & Distributed Processing, and Applications: Proceedings from PDPTA'20, CSC'20, MSV'20, and GCC'20 (Transactions on Computational Science and Computational Intelligence)
Springer 2021 ISBN:3030699838
AI導入によるバイオテクノロジーの発展 (バイオテクノロジーシリーズ)
シーエムシー出版 2018 ISBN:4781313159

Works (7)：

Trajectory data of molecular dynamics simulation of SARS-CoV-2 RNA dependent RNA polymerase (RdRp, also named nsp12) and inhibitor drug candidates
Nobuaki Yasuo, Ryunosuke Yoshino, Masakazu Sekijima 2020 - 現在
Trajectory data of molecular dynamics simulation of SARS-CoV-2 Main Protease and inhibitor drug candidates
Ryunosuke Yoshino, Nobuaki Yasuo, Masakazu Sekijima 2020 - 現在
GARGOYLES
Daiki Erikawa, Nobuaki Yasuo, Masakazu Sekijima 2023 -
SIEVE-Score
Nobuaki Yasuo, Masakazu Sekijima 2018 -
HoloMol
Atsushi Koyama, Nobuaki Yasuo, Masakazu Sekijima 2018 -

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Professional career (1)：

Work history (10)：

2020/04 - 現在 Tokyo Institute of Technology School of Computing
2022/04 - 2022/06 The University of Tokyo
2016/04 - 2020/03 Tokyo Institute of Technology Advanced Computational Drug Discovery Uniut
2009/04 - 2016/03 Tokyo Institute of Technology Global Scientific Information and Computing Center
2007/04 - 2010/03 Waseda University Faculty of Science and Engineering

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Committee career (18)：

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Awards (9)：

2023/03 - 情報処理学会研究会功労賞
2021/03 - Tokyo Institute of Technology Best Teacher Award
2020/11 - The Ministry of Economy, Trade and Industry (METI) the METI Minister's Awards for the 2020 Awards Program for Individual and Other Contributors to the Promotion of Informatization
2019/02 - Tokyo Institute of Technology Best Teacher Award
2018/10 - 第7回生命医薬情報学連合大会(IIBMP2018) 優秀ポスター発表賞 Mixed Realityを用いた蛋白質・リガンドの三次元可視化による創薬支援システムの開発

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Association Membership(s) (7)：

INFORMATION PROCESSING SOCIETY OF JAPAN , CBI学会 , 日本生物物理学会 , IEEE , ACM , Biophysical Society , 人工知能学会

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