Research keywords (5)：
Bioinformatics
, Protein science
, 計算生命科学
, Biophysics
, Biological database
Research theme for competitive and other funds (1)：
2019 - 2023 Technology development and application for cell surface visual proteomics
Papers (30)：
Nozomi Nagano, Narumi Tokunaga, Masami Ikeda, Hiroko Inoura, Duong A Khoa, Makoto Miwa, Mohammad G Sohrab, Goran Topić, Mari Nogami-Itoh, Hiroya Takamura. A novel corpus of molecular to higher-order events that facilitates the understanding of the pathogenic mechanisms of idiopathic pulmonary fibrosis. Scientific reports. 2023. 13. 1. 5986-5986
Mohammad Golam Sohrab, Khoa Duong, Ikeda Masami, Goran Topic, Yayoi Natsume-Kitatani, Masakata Kuroda, Mari Nogami Itoh, Hiroya Takamura. BiomedCurator: Data Curation for Biomedical Literature. AACL/IJCNLP (System Demonstrations). 2022. 63-71
Kazuyoshi Ikeda, Takuo Doi, Masami Ikeda, Kentaro Tomii. PreBINDS: An Interactive Web Tool to Create Appropriate Datasets for Predicting Compound-Protein Interactions. Frontiers in molecular biosciences. 2021. 8. 758480-758480
Mohammad Golam Sohrab, Khoa Duong, Makoto Miwa, Goran Topic, Ikeda Masami, Hiroya Takamura. BENNERD: A Neural Named Entity Linking System for COVID-19. Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing: System Demonstrations. 2020. 182-188
Tatsuki Kikegawa, Takuya Yamaguchi, Ryohei Nambu, Kenji Etchuya, Masami Ikeda, Yuri Mukai. Signal-anchor sequences are an essential factor for the Golgi-plasma membrane localization of type II membrane proteins. Bioscience, biotechnology, and biochemistry. 2018. 82. 10. 1708-1714
BiomedCurator: Data Curation for Biomedical Literature.
(2nd Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics and the 12th International Joint Conference on Natural Language Processing (AACL-IJCNLP2022) 2022)
BENNERD: A neural named entity linking system for COVID-19.
(Conference on Empirical Methods in Natural Language Processing (EMNLP2020) 2020)
Development of membrane protein family identifier by collating EM images and atomic coordinate data.
(2020)
Determination of key regions relating GPCR - G-protein coupling selectivity and their application for predicting coupling G-protein kinds.
(2019)
