Rchr
J-GLOBAL ID：200901019405653975   Update date: Mar. 25, 2024

Shinoda Wataru

シノダ ワタル | Shinoda Wataru
Affiliation and department：
Okayama University The Research Institute for Interdisciplinary Science

About Okayama University The Research Institute for Interdisciplinary Science


Research field  (2)： Basic physical chemistry ,  Bio-, chemical, and soft-matter physics
Research keywords  (1)： Molecular simulation, multiscale modeling, lipid membrane, biological membrane, self-assembly, liposome, lipid nanoparticles, drug delivery carrier, virus capsid, polymer materials, polymer electrolytes
Research theme for competitive and other funds  (5)：
  • 2023 - 2026 Average orientation of lipid acyl chains in the domain structure of model membranes
  • 2021 - 2025 Molecular Dynamics of Intracellular Transport of Lipid Nanoparticles: Molecular mechanism of endosomal escape of nucleic acids
  • 2016 - 2021 Dynamic conformation and domain structure of lipid molecules in model biomembranes
  • 2014 - 2016 Environment-dependent force fields for complex biological systems based on very large-scale first-principles calculations
  • 2011 - 2015 Multiscale Molecular Modeling of Membrane Fusion
Papers (156)：
  • Wenting Huo, Koji Miki, Huiying Mu, Takashi Osawa, Harumi Yamaguma, Yuuya Kasahara, Satoshi Obika, Yoshimasa Kawaguchi, Hisaaki Hirose, Shiroh Futaki, et al. Light-controllable cell-membrane disturbance for intracellular delivery. Journal of Materials Chemistry. B. 2024
  • Yuichi Umegawa, Sho Kato, Sangjae Seo, Wataru Shinoda, Satoshi Kawatake, Shigeru Matsuoka, Michio Murata. Protein-lipid acyl chain interactions: Depth-dependent changes of segmental mobility of phospholipid in contact with bacteriorhodopsin. Biophysical chemistry. 2024. 308. 107204-107204
  • Yusuke Miyazaki, Wataru Shinoda. pSPICA Force Field Extended for Proteins and Peptides. Journal of Chemical Information and Modeling. 2024. 64. 2. 532-542
  • Masatoshi Maeki, Niko Kimura, Yuto Okada, Kazuki Shimizu, Kana Shibata, Yusuke Miyazaki, Akihiko Ishida, Kento Yonezawa, Nobutaka Shimizu, Wataru Shinoda, et al. Understanding the effects of ethanol on the liposome bilayer structure using microfluidic-based time-resolved small-angle X-ray scattering and molecular dynamics simulations. Nanoscale Advances. 2024
  • Keisuke Shigenobu, Seiji Tsuzuki, Frederik Philippi, Taku Sudoh, Yosuke Ugata, Kaoru Dokko, Masayoshi Watanabe, Kazuhide Ueno, Wataru Shinoda. Molecular Level Origin of Ion Dynamics in Highly Concentrated Electrolytes. The Journal of Physical Chemistry B. 2023. 127. 48. 10422-10433
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MISC (65)：
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Lectures and oral presentations  (2)：
  • Simulating Endosomal Escape of Lipid Nanoparticles
    (The 6th International Conference on Molecular Simulation (ICMS2023) 2023)
  • Coarse Grained Molecular Dynamics Study on Endosomal Escape of dsDNA Encapsulated in Lipid Nanoparticles using the SPICA Force Field
    (CECAM workshop: Macromolecular complexes: from ab initio and integrative modelling to functional dynamics 2023)
Education (1)：
  • 1995 - 1998 Tokyo Institute of Technology
Professional career (1)：
  • 博士(理学) (東京工業大学)
Work history (7)：
  • 2021/10 - 現在 Okayama University The Research Institute for Interdisciplinary Science Professor
  • 2014/01 - 2021/09 Nagoya University Graduate School of Engineering Associate Professor
  • 2001/04 - 2013/12 National Institute of Advanced Industrial Science and Technology
  • 2005/04 - 2007/03 University of Pennsylvania Department of Chemistry Visiting Scholar
  • 2000/04 - 2001/03 National Institute of Materials and Chemical Research
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Association Membership(s) (8)：
分子シミュレーション学会 ,  日本化学会 ,  理論化学会 ,  American Chemical Society ,  溶液化学研究会 ,  JAPAN SOCIETY FOR MOLECULAR SCIENCE ,  THE SOCIETY OF POLYMER SCIENCE, JAPAN ,  THE BIOPHYSICAL SOCIETY OF JAPAN
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