Rchr
J-GLOBAL ID：200901037707199627   Update date: Apr. 14, 2024

Atomi Haruyuki

アトミ ハルユキ | Atomi Haruyuki
Affiliation and department：
Kyoto University Graduate School of Engineering, Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering Department of Synthetic Chemistry and Biological Chemistry

About Kyoto University Graduate School of Engineering, Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering Department of Synthetic Chemistry and Biological Chemistry


Job title： Professor,Professor
Homepage URL  (1)： http://www.sbchem.kyoto-u.ac.jp/atomi-lab/en
Research field  (1)： Applied biochemistry
Research keywords  (6)： metabolism and physiology ,  Extremophiles ,  Archaea ,  Genomics ,  Biological Chemistry ,  Applied Microbiology
Research theme for competitive and other funds  (39)：
  • 2022 - 2025 Transportome analysis on Archaea
  • 2019 - 2024 Post-Koch Ecology - The next-era microbial ecology
  • 2019 - 2024 Post-Koch studies on Archaea: the third domain of life
  • 2020 - 2023 Functional analysis of novel Cas protein candidates for development of new genetic engineering technology
  • 2018 - 2021 Understanding how fundamental biomolecules are synthesized in primordial microbes
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Papers (261)：
  • Yuta Michimori, Yuusuke Yokooji, Haruyuki Atomi. An energy-conserving reaction in amino acid metabolism catalyzed by arginine synthetase. Proceedings of the National Academy of Sciences. 2024. 121. 16
  • Yuta Michimori, Rikihisa Izaki, Yu Su, Yuto Fukuyama, Shigeru Shimamura, Karin Nishimura, Yuya Miwa, Sotaro Hamakita, Takahiro Shimosaka, Yuki Makino, et al. Removal of phosphoglycolate in hyperthermophilic archaea. Proceedings of the National Academy of Sciences. 2024. 121. 16
  • Akiko Kita, Yuna Ishida, Takahiro Shimosaka, Yuta Michimori, Kira Makarova, Eugene Koonin, Haruyuki Atomi, Kunio Miki. Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis. Proteins: Structure, Function, and Bioinformatics. 2024
  • Yuto Fukuyama, Shigeru Shimamura, Sanae Sakai, Yuta Michimori, Tomomi Sumida, Yoshito Chikaraishi, Haruyuki Atomi, Takuro Nunoura. Development of a rapid and highly accurate method for 13C tracer-based metabolomics and its application on a hydrogenotrophic methanogen. ISME communications. 2024. 4. 1. ycad006
  • Su Y, Michimori Y, Atomi H. Biochemical and genetic examination of two aminotransferases from the hyperthermophilic archaeon Thermococcus kodakarensis. Frontiers in microbiology. 2023
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MISC (202)：
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Books (9)：
  • アーキア生物学
    共立出版 2017
  • 応用微生物学
    文永堂出版 2016
  • Protein Engineering Handbook Volume 3
    2013
  • Thermophilic Microbes in Environmental and Industrial Biotechnology
    Springer 2013
  • Thermophiles: Biology and Technology at High Temperatures
    CRC Press 2008
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Lectures and oral presentations  (21)：
  • The unique metabolism of hyperthermophilic archaea
    (JpGU Meeting 2021 2021)
  • What the molecular biology of archaea tells us
    (43rd Annual Meeting of the Molecular Biology Society of Japan 2020)
  • Studies on coenzyme biosynthesis ~a new lipoyl synthase~
    (MBoA7 Zoom Symposium 2020)
  • The unique metabolism in Archaea
    (2019 International Congress on Metabolic Sciences (ICMS2019) 2019)
  • Coenzyme A Biosynthesis in Archaea
    (The 14th Asian Congress on Biotechnology (ACB 2019) 2019)
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Works (2)：
  • 微生物の多彩なCO<sub>2</sub>代謝に関する基礎研究
    1999 - 2001
  • Fundamental studies on various CO<sub>2</sub> fixation mechanisms from microorganisms
    1999 - 2001
Education (3)：
  • 1989 - 1992 Kyoto University Graduate School, Division of Engineering
  • 1987 - 1989 Kyoto University Graduate School of Engineering School of Industrial Chemistry
  • 1983 - 1987 Kyoto University Faculty of Engineering School of Industrial Chemistry
Professional career (1)：
  • Doctor of Engineering (Kyoto University)
Work history (4)：
  • 2009/03 - 現在 Kyoto University Graduate School of Engineering Professor
  • 1997/05 - 2009/02 Kyoto University Graduate School of Engineering Associate Professor
  • 1992 - 1997 京都大学助手
  • 1992 - 1997 Kyoto University, Research Assistant
Awards (1)：
  • 2004 - 極限環境微生物学会研究奨励賞
Association Membership(s) (8)：
International Society for Extremophiles ,  Japanese Society of Enzyme Engineering ,  日本環境バイオテクノロジー学会 ,  日本化学会 ,  日本農芸化学会 ,  日本生物工学会 ,  日本分子生物学会 ,  日本生化学会
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