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J-GLOBAL ID：200901057219911327   Update date: Mar. 30, 2024

Yugi Katsuyuki

ユギ カツユキ | Yugi Katsuyuki
Affiliation and department：
RIKEN

About RIKEN


Job title： Senior Scientist
Other affiliations (2)：
Homepage URL  (1)： https://www.riken.jp/research/labs/ims/integr_cell_sys/
Research field  (2)： Systems genomics ,  Biological, health, and medical informatics
Research keywords  (4)： mathematical modeling ,  systems biology ,  metabolism ,  trans-omics
Research theme for competitive and other funds  (9)：
  • 2022 - 2028 Data-driven Darwinian medicine approach for exploring shared metabolic regulatory networks between seasonal affective disorder and hibernation
  • 2018 - 2023 Development of next-generation trans-omics technologies for multi-timescale metabolic regulation in psychiatric disorders
  • 2015 - 2019 トランスオミクス解析による多剤併用療法の合理的設計と多因子代謝疾患の制御
  • 2015 - 2019 Identification and control of disease-specific network by trans-omic analysis
  • 2008 - 2010 Design and construction of genetic relaxation oscillators based on systems and synthetic biology.
Show all
Papers (38)：
  • Yunfan Bai, Keigo Morita, Toshiya Kokaji, Atsushi Hatano, Satoshi Ohno, Riku Egami, Yifei Pan, Dongzi Li, Katsuyuki Yugi, Saori Uematsu, et al. Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity. iScience. 2024. 27. 3. 109121-109121
  • Kozo Nishida, Junichi Maruyama, Kazunari Kaizu, Koichi Takahashi, Katsuyuki Yugi. Transomics2cytoscape: an automated software for interpretable 2.5-dimensional visualization of trans-omic networks. NPJ systems biology and applications. 2024. 10. 1. 16-16
  • Toshiya Kokaji, Miki Eto, Atsushi Hatano, Katsuyuki Yugi, Keigo Morita, Satoshi Ohno, Masashi Fujii, Ken-Ichi Hironaka, Yuki Ito, Riku Egami, et al. In vivo transomic analyses of glucose-responsive metabolism in skeletal muscle reveal core differences between the healthy and obese states. Scientific reports. 2022. 12. 1. 13719-13719
  • Akira Terakawa, Yanhui Hu, Toshiya Kokaji, Katsuyuki Yugi, Keigo Morita, Satoshi Ohno, Yifei Pan, Yunfan Bai, Andrey A. Parkhitko, Xiaochun Ni, et al. Trans-omics analysis of insulin action reveals a cell growth subnetwork which co-regulates anabolic processes. iScience. 2022. 25. 5. 104231-104231
  • Lisa Okamoto, Soyoka Watanabe, Senka Deno, Xiang Nie, Junichi Maruyama, Masaru Tomita, Atsushi Hatano, Katsuyuki Yugi. Meta-analysis of transcriptional regulatory networks for lipid metabolism in neural cells from schizophrenia patients based on an open-source intelligence approach. Neuroscience Research. 2022. 175. 82-97
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MISC (6)：
  • 小鍛治 俊也, 幡野 敦, 柚木 克之, 黒田 真也. 【マルチオミクスを使って得られた最新知見 糖尿病・がん・腸内細菌研究における実例と解析法】マウス肝臓における肥満特異的な代謝制御トランスオミクスネットワーク構築. 実験医学. 2020. 38. 8. 1289-1294
  • 柚木 克之, Krycer James R, 平山 明由, Fazakerley Daniel J, Quek Lake-Ee, Scalzo Richard, 大野 聡, Hodson Mark P, 池田 五月, 庄司 二葉, et al. 動的13C-メタボロミクスおよびリン酸化プロテオミクスの統合解析により明らかとなった脂肪細胞の代謝プライミング機構. JSBMS Letters. 2017. 42. Suppl. 108-108
  • Trans-omics : reconstruction of a global network from multiple 'omic' data. 2015. 73. 5. 392-394
  • TOMITA Masaru, HASHIMOTO Kenta, TAKAHASHI Koichi, MATSUZAKI Yuri, MATSUSHIMA Ryo, YUGI Katsuyuki, MIYOSHI Fumihiko, SAITO Yusuke, NAKAYAMA Yoichi, Masaru Tomita, et al. E-CELL : Towards Reconstruction of the Cell ("New Trends of Bioinformatic"). Journal of Japanese Society for Artificial Intelligence. 2000. 15. 1. 21-26
  • TOMITA Masaru, HASHIMOTO Kenta, TAKAHASHI Koichi, MATSUZAKI Yuri, MATSUSHIMA Ryo, SAITO Kanako, YUGI Katsuyuki, MIYOSHI Fumihiko, NAKANO Hisako, TANIDA Yoichi, et al. A Virtual Cell with 127 Genes. 1999. 13. 28-33
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Patents (1)：
  • 多階層網羅的データに基づく細胞内分子間ネットワーク自動推定法
Books (1)：
  • ゲノミクス・プロテオミクスの新展開 生物情報の解析と応用 「E-Cell」
    エヌ・ティー・エス 2004
Lectures and oral presentations  (6)：
  • 健常および肥満マウスの肝臓および筋肉におけるグルコース負荷に対する代謝変動の網羅的解析
    (日本生化学会大会・日本分子生物学会年会合同大会講演要旨集 2015)
  • Transomics analysis of insulin action
    (Abstracts for Annual Meeting of Japanese Proteomics Society 2014)
  • RNA-Seqを用いたインスリン依存的選択的スプライシング変動の網羅的解析
    (日本生化学会大会プログラム・講演要旨集 2013)
  • Kinetic Modelling of Energy Metabolism in Mitochondria
    (GI 1999)
  • E-CELLプロジェクトの概要 細胞内全代謝の包括的シミュレーションに向けて
    (日本分子生物学会年会プログラム・講演要旨集 1998)
ｍore...
Professional career (1)：
  • Ph. D. (Keio University)
Work history (7)：
  • 2020/07 - RIKEN Center for Integrative Medical Sciences Team Leader
  • 2017/01 - 2020/06 RIKEN Center for Integrative Medical Sciences Senior Scientist
  • 2015/10 - 2019/03 Japan Science and Technology Agency PRESTO PRESTO Researcher
  • 2017/04 - Keio University Graduate School of Media and Governance Project Associate Professor
  • 2013/07 - 2016/12 The University of Tokyo Graduate School of Science Department of Biophysics and Biochemistry Research Associate
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Committee career (4)：
  • 2019/01 - 2019/12 Molecular Biology Society of Japan Poster Committee Member
  • 2018/11 - 2019/11 日本分子生物学会 第41回日本分子生物学会年会 ポスターディスカッサー
  • 2018/04 - 2019/11 International Conference on Systems Biology 2019 Organizing committee core member
  • 2018/07 - 2018/09 科学技術振興機構・研究開発戦略センター 研究開発の俯瞰報告書 (2019年版) ライフサイエンス・臨床医学分野 作成協力者
Awards (1)：
  • 2020/07 - Mishima Kaiun Memorial Foundation Mishima Kaiun Memorial Foundation Award
Association Membership(s) (5)：
日本薬理学会 ,  日本プロテオーム学会 ,  日本神経科学学会 ,  International Society for Systems Biology ,  THE MOLECULAR BIOLOGY SOCIETY OF JAPAN
※ Researcher’s information displayed in J-GLOBAL is based on the information registered in researchmap. For details, see here.

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