- 2022 - 2028 Platform for Advanced Genome Science
- 2022 - 2028 生命科学連携推進協議会
- 2016 - 2021 先進ゲノム解析研究推進プラットフォーム
- 2019 - 2020 専門書「冥王代生命学」の出版
- 2015 - 2020 International Research Network for the Hadean Bioscience
- 2014 - 2019 Hadean Eon Microbiome
- 2014 - 2019 Hadean Bioscience
- 2014 - 2019 Hadean Bioscience
- 2015 - 2018 Mechanism of intestinal midrobiota regulation by intestinal IgA
- 2013 - 2016 Behavior of microbial community in the environment polluted by aromatic compound
- 2013 - 2016 Metagenomic and metatranscriptomic analysis of rice paddy soil
- 2010 - 2016 Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- 2013 - 2015 Regulation and reconstruction of acquired memories in human microbiota
- 2011 - 2014 Comparative analysis of H-NS binding profiles of three E.coli strains suggests H-NS binding contributes to sequence diversification of E.coli genome
- 2010 - 2012 Maintenance mechanism of oral homeostasis revealed by fine scale analysis of microbiota
- 2010 - 2012 Response of soil microbial community to exposure of environmental pollutants
- 2008 - 2010 Escherichia coli pan-genome analysis using next-generation DNA sequencing technologies
- 2008 - 2010 ChIP-chip analysis of diversity of binding sites of transcriptional factors in thres E.coli strains
- 2005 - 2009 Computational Biology for complicated genome system
- 2006 - 2007 Genome analysis of bacteria inhabiting the mucosal surface of intestine
- 2005 - 2006 病原細菌におけるIII型分泌装置のエフェクター蛋白質の情報解析的予測
- 2004 - 2004 病原遺伝子データベースの構築およびゲノム全遺伝子の相互比較による相関解析
- 2003 - 2003 病原性データベースの構築およびゲノム全遺伝子の相互比較による相関解析
- 2002 - 2003 大腸菌O157の病原遺伝子発現における外来性tRNA遺伝子の役割
- Metagenomics
- メタゲノミクス
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