Rchr
J-GLOBAL ID：200901093237222730   Update date: Mar. 03, 2024

Shionyu Masafumi

シオニュウ マサフミ | Shionyu Masafumi
Affiliation and department：
長浜バイオ大学 バイオサイエンス学部

About 長浜バイオ大学 バイオサイエンス学部


Job title： 准教授
Homepage URL  (1)： http://b-lab.nagahama-i-bio.ac.jp/~m_shionyu/
Research field  (1)： Biophysics
Research keywords  (11)： protein domain ,  RNA ,  alternative splicing ,  protein interaction ,  database ,  ligand-binding site ,  functional site ,  protein structure ,  protein module ,  homology modeling ,  RNA editing
Research theme for competitive and other funds  (8)：
  • 2022 - 2025 Can a combination of cofactor-binding prediction and experimental validation identify uncharacterized enzymes?
  • 2019 - 2022 Development of a prediction method for cofactors binding to uncharacterized enzymes using feedback from experimental validations
  • 2015 - 2018 Development of a method for predicting functional sites in function-unknown splicing isoforms
  • 2011 - 2012 Development of a estimation method for difference of functional sites among splicing isoforms
  • 2010 - 2012 「ターゲットタンパクプログラムの情報解析支援」(ターゲットタンパク研究情報プラットフォームの構築運用)
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Papers (35)：
  • Yunhao Zhu, Kaishin Shigeyoshi, Yumiko Hayakawa, Sae Fujiwara, Masamichi Kishida, Hitoshi Ohki, Tomohisa Horibe, Masafumi Shionyu, Tamio Mizukami, Makoto Hasegawa. Acceleration of Protein Degradation by 20S Proteasome-Binding Peptides Generated by In Vitro Artificial Evolution. International Journal of Molecular Sciences. 2023. 24. 24. 17486-17486
  • Kaoru Nomura, Shoko Mori, Kohki Fujikawa, Tsukiho Osawa, Shugo Tsuda, Kumiko Yoshizawa-Kumagaye, Shun Masuda, Hideki Nishio, Taku Yoshiya, Takao Yoda, et al. Role of a bacterial glycolipid in Sec-independent membrane protein insertion. Scientific reports. 2022. 12. 1. 12231-12231
  • Shoko Mori, Kaoru Nomura, Kohki Fujikawa, Tsukiho Osawa, Masafumi Shionyu, Takao Yoda, Tsuyoshi Shirai, Shugo Tsuda, Kumiko Yoshizawa-Kumagaye, Shun Masuda, et al. Intermolecular Interactions between a Membrane Protein and a Glycolipid Essential for Membrane Protein Integration. ACS chemical biology. 2022. 17. 3. 609-618
  • Atsushi Hijikata, Clara Shionyu-Mitsuyama, Setsu Nakae, Masafumi Shionyu, Motonori Ota, Shigehiko Kanaya, Takatsugu Hirokawa, Shogo Nakajima, Koichi Watashi, Tsuyoshi Shirai. Evaluating cepharanthine analogues as natural drugs against SARS-CoV-2. FEBS open bio. 2022. 12. 1. 285-294
  • Atsushi Hijikata, Clara Shionyu, Setsu Nakae, Masafumi Shionyu, Motonori Ota, Shigehiko Kanaya, Tsuyoshi Shirai. Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins. Biophysics and physicobiology. 2021. 18. 226-240
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MISC (16)：
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Books (2)：
  • -基礎と実習バイオインフォマティクス-
    共立出版 2004
  • 基礎と実習バイオインフォマティクス
    共立出版 2004
Lectures and oral presentations  (55)：
  • アミノ酸残基相互作用統計に基づくタンパク質-タンパク質ドッキング法の開発
    (jSBI 2015 2015)
  • Function prediction of uncharacterized splicing isoforms
    (The 53th annual meeting of the biophysical society of Japan 2015)
  • Development of a prediction server for 3D structures of multidomain proteins
    (The 15th Annual Metting of the Protein Science Society of Japan 2015)
  • タンパク質相互作用統計に基づくタンパク質ータンパク質ドッキングポーズのスコアリング法の開発
    (第15回日本蛋白質科学会年会 2015)
  • イントロンの起源をどう考えるかー発見から現在までー
    (第37回日本分子生物学会年会 2014)
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Education (2)：
  • 1997 - 2002 Nagoya University Graduate School of Science Division of Biological Science
  • 1993 - 1997 Nagoya University Faculty of Science Department of Biology
Professional career (1)：
  • Ph D (Nagoya University)
Work history (5)：
  • 2014/10 - 現在 Nagahama Intitute of Bio-Science and Technology Faculty of Bioscience Associate Professor
  • 2005/04 - 2014/09 Faculty of Bio-Science, Nagahama Institute of Bio-Science and Technology Lecturer
  • 2003/04 - 2005/03 日本学術振興会 特別研究員PD
  • 2002/04 - 2003/03 Graduate School of Science, Nagoya University
  • 2000/07 - 2002/03 日本学術振興会 特別研究員DC2
Association Membership(s) (4)：
THE GENETICS SOCIETY OF JAPAN ,  THE MOLECULAR BIOLOGY SOCIETY OF JAPAN ,  PROTEIN SCIENCE SOCIETY OF JAPAN ,  THE BIOPHYSICAL SOCIETY OF JAPAN
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