Obayashi Takeshi

オオバヤシタケシ | Obayashi Takeshi

Affiliation and department：
Job title： Professor
Homepage URL (2)： http://db.tohoku.ac.jp/whois/detail/654583dd6714e56d865e4bb6434f09d6.html , http://db.tohoku.ac.jp/whois/e_detail/654583dd6714e56d865e4bb6434f09d6.html

Research field (4)： Ecology and environmental science , Linguistics , Plants: molecular biology and physiology , Genomics

Research keywords (9)： Population genetics , Computational linguistics , Bioinformatics , Computational biology , Transcriptome , Evolutionary Ecology , Database , Gene coexpression , Gene network

Research theme for competitive and other funds (13)：

2015 - 現在組織横断型遺伝子共発現法を用いた細胞間コミュニケーション解析
2012 - 現在遺伝子共発現に基づく生命システム進化学
2011 - 現在微細藻類の遺伝子共発現データベースALCOdbの構築・運用
2007 - 現在動物の遺伝子共発現データベースCOXPRESdbの構築・運用
2005 - 現在植物の遺伝子共発現データベースATTED-II の構築・運用

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Papers (51)：

Naoki Sato, Takeshi Obayashi. Lipid Pathway Databases with a Focus on Algae. Methods in molecular biology (Clifton, N.J.). 2021. 2295. 455-468
Nur A Hidayati, Yui Yamada-Oshima, Masako Iwai, Takashi Yamano, Masataka Kajikawa, Nozomu Sakurai, Kunihiro Suda, Kanami Sesoko, Koichi Hori, Takeshi Obayashi, et al. Lipid remodeling regulator 1 (LRL1) is differently involved in the phosphorus-depletion response from PSR1 in Chlamydomonas reinhardtii. The Plant journal : for cell and molecular biology. 2019. 100. 3. 610-626
Obayashi T, Kagaya Y, Aoki Y, Tadaka S, Kinoshita K. COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. Nucleic acids research. 2018
Obayashi T, Aoki Y, Tadaka S, Kagaya Y, Kinoshita K. ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index. Plant & cell physiology. 2018. 59. 2. 440
Obayashi T, Aoki Y, Tadaka S, Kagaya Y, Kinoshita K. ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index. Plant & cell physiology. 2018. 59. 1. e3

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MISC (31)：

梅津純平, 森宙史, 堀孝一, 大林武, 太田啓之, 黒川顕. 藻類比較ゲノムデータベースAlgaenomeの構築. 日本ゲノム微生物学会年会要旨集. 2016. 10th. 88
土多隆雄, 大林武, 木下賢吾. 遺伝子発現量データを利用した表現型の違いに影響を及ぼす遺伝子セットの検出方法の開発. 研究報告バイオ情報学(BIO). 2013. 2013. 7. 1-2
Identification of functional modules in protein networks by near-clique detection. 2013. 2013. 4. 1-2
Gene module detection from the conservation of gene coexpression patterns among species. 2013. 2013. 5. 1-2
Obayashi T, Kinoshita K. 公共の遺伝子発現データの二次利用. Surgery Frontier. 2012. 19. 2. 89-95

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Books (6)：

バイオインフォマティクス入門
慶應義塾大学出版会 2015 ISBN:9784766422511
実験医学2011年9月増刊号「バイオデータベースとソフトウェアアップデート」
羊土社 2011 ISBN:9784758102902
ゲノムが拓く生態学-遺伝子の網羅的解析で迫る植物の生きざま
文一総合出版 2011 ISBN:9784829910870
実験医学MOOK「トランスポートソーム-生体膜輸送機構の全体像に迫る-基礎、臨床、創薬応用研究の最新成果」
メディカルドゥ 2011 ISBN:4944157495
Protein function prediction for omics era
Springer Verlag 2010 ISBN:9400708807

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Lectures and oral presentations (3)：

How to measure the similarity of gene expression patterns to identify gene function
(QBIC2011 Bio-Informatics Workshop 2011)
ATTED-II
(19th International Conference on Arabidopsis Research 2011)
Application of large-scale mRNA expression data sets for comprehensive analysis of plant hormone signaling
(QBIC2007 Bio-Informatics Workshop 2007)

Education (2)：

1997 - 2004 Tokyo Institute of Technology Graduate School of Bioscience and Biotechnology
1994 - 1997 Tokyo Institute of Technology School of Bioscience and Biotechnology

Professional career (1)：

博士(理学) (Tokyo Institute of Technology)

Work history (8)：

2022/10 - 現在 Tohoku University Graduate School of Information Sciences Professor
2012/04 - 2022/09 Tohoku University Graduate School of Information Sciences Associate professor
2009/12 - 2012/03 Graduate School of Information Sciences, Tohoku University Assistant professor
2009/10 - 2009/11 Graduate School of Information Sciences, Tohoku University Postdoctoral Researcher
2006/04 - 2009/09 Human Genome Center, The Institute of Medical Science, The University of Tokyo Postdoctoral Researcher

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Committee career (14)：

2015/04 - 現在 Japanese Society for Bioinformatics Treasurer
2023 - 2026 The Japanese Society of Plant Physiologists Handling Editor
2023/04 - 2025/03 Information processing society of Japan Steering Committee (Secretary) of The Special Interest Groups of Bioinformatics and Genomics
2018/04 - 2022/03 Japanese Society for Bioinformatics Board of Directors
2017/04 - 2021/03 Information Processing Society of Japan Steering Committee for The Special Interest Groups of Bioinformatics and Genomics (BIO)

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Awards (14)：

2021/03 - Tohoku University President's Education Award
2021/02 - Tohoku University Award for Contribution to University Education
2020/03 - Japanese Society of Plant Physiologists PCP Top Cited Paper Award 2020
2018/06 - 第54回バイオ情報学研究発表会優秀プレゼンテーション賞
2017/11 - Minoru Ishida Foundation (Young Investigator Award)

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Association Membership(s) (7)：

The Ecological Society of Japan , ISCB Student Council Japan Division , Information Processing Society of Japan , The Japanese Society for Artificial Intelligence , The Japanese Society of Plant Physiologists , International Society for Computational Biology , Japanese Society for Bioinformatics

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