YAMASHITA Yui

Research field (1)： Molecular biology

Research keywords (3)：構造生物学 , 生化学 , 植物分子生物学

Research theme for competitive and other funds (11)：

2021 - 2024 複数の上流ORFが奏でる臨機応変なショ糖感知機構の解明
2021 - 2022 ゲノム・転写・翻訳統合ネットワーク解析を通じたバイオコール生産のための草本作物の木質化技術開発
2019 - 2022 情報分子としてのメチオニンによる新規遺伝子発現制御の開拓
2019 - 2021 植物におけるリボソームによるショ糖感知とC/N比の代謝統御機構の解明
2020 - 2021 植物のショ糖感知を司る遺伝子間の多様性の解明

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Papers (18)：

Tomoya Imamichi, Nao Kusumoto, Haruka Aoyama, Seidai Takamatsu, Yugo Honda, Shiori Muraoka, Yuka Hagiwara-Komoda, Yukako Chiba, Hitoshi Onouchi, Yui Yamashita, et al. Phylogeny-linked occurrence of ribosome stalling on the mRNAs of Arabidopsis unfolded protein response factor bZIP60 orthologs in divergent plant species. Nucleic acids research. 2024
Yuta Hiragori, Hiro Takahashi, Taihei Karino, Atsushi Kaido, Noriya Hayashi, Shun Sasaki, Kodai Nakao, Taichiro Motomura, Yui Yamashita, Satoshi Naito, et al. Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels. Plant molecular biology. 2022
Naoyuki Sotta, Yukako Chiba, Haruka Aoyama, Seidai Takamatsu, Takamasa Suzuki, Kyoko Miwa, Yui Yamashita, Satoshi Naito, Toru Fujiwara. Translational Landscape of a C4 plant, Sorghum bicolor, under Normal and Sulfur Deficient Conditions. Plant & cell physiology. 2022
Naoyuki Sotta, Yukako Chiba, Kyoko Miwa, Seidai Takamatsu, Mayuki Tanaka, Yui Yamashita, Satoshi Naito, Toru Fujiwara. Global analysis of boron-induced ribosome stalling reveals its effects on translation termination and unique regulation by AUG-stops in Arabidopsis shoots. The Plant journal. 2021
Hiro Takahashi, Noriya Hayashi, Yuta Hiragori, Shun Sasaki, Taichiro Motomura, Yui Yamashita, Satoshi Naito, Anna Takahashi, Kazuyuki Fuse, Kenji Satou, et al. Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA. BMC genomics. 2020. 21. 1. 260-260

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MISC (17)：

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Education (3)：

2011 - 2014 Hokkaido University Life science
2009 - 2011 Hokkaido University Life science
2005 - 2009 Hokkaido University Agriculture

Professional career (1)：

生命科学 (博士) (北海道大学,大学院生命科学院)

Work history (6)：

2017/04 - 2022 Hokkaido University Research Faculty of Agriculture Assistant Professor
2016/03 - 2017/03 University of Munich, LMU Gene Center Humboldt Research Fellow
2015/01 - 2016/02 University of Munich, LMU Gene Center EMBO Long-Term Fellow
2014/10 - 2014/12 University of Munich, LMU, Gene Center Postdoctoral Fellow
2014/04 - 2014/09 Hokkaido University, Research Faculty of Agriculture Postdoctoral Fellow

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Awards (3)：

2016/03 - Alexander von Humboldt Foundation Humboldt Research Fellowship
2015/01 - European Molecular Biology Organization Long-Term Fellowship
2014/08 - The JSPCMB (Japanese Society for Plant Cell and Molecular Biology) Student Award

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