Kawashima Takeshi

カワシマタケシ | Kawashima Takeshi

Affiliation and department：
Homepage URL (1)： https://kaken.nii.ac.jp/d/r/10378531.ja.html

Research field (3)： Evolutionary biology , Systems genomics , Genomics

Research keywords (21)： Evolution of Metabolic Pathways , Hemichordates , Acornworm , 進化 , カタユウレイボヤ , 遺伝子発現解析 , 脊索動物門 , 被嚢動物 , 海産無脊椎動物 , 比較ゲノム , ショートリード・シーケンサー , ナメクジウオ , バイオインフォマティクス , ホヤ , 遺伝子発現情報 , 被嚢細胞 , トランスクリプトーム , 染色体地図 , 被嚢 , 遺伝的多型 , Ciona intestinalis

Research theme for competitive and other funds (7)：

2018 - 2023 複雑ネットワークの視点からの新規細胞タイプの進化
2019 - 2022 Shell museomics: Experimental study to utilize museum collections
2017 - 2021 Creating reference genomes of lactic acid bacteria and Bifidobacteria
2010 - 2012 Transcriptome analysis for tunic cells of the ascidian, Ciona intestinalis
2005 - 2006 ホヤとナメクジウオの比較ゲノム解析

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Papers (60)：

Tom Humphreys, Keith Weiser, Asuka Arimoto, Akane Sasaki, Gene Uenishi, Brent Fujimoto, Takeshi Kawashima, Kekoa Taparra, Janos Molnar, Noriyuki Satoh, et al. Ancestral Stem Cell Reprogramming Genes Active in Hemichordate Regeneration. Frontiers in Ecology and Evolution. 2022. 10
Shinkuro Takenaka, Takeshi Kawashima, Masanori Arita. A sugar utilization phenotype contributes to the formation of genetic exchange communities in lactic acid bacteria. FEMS microbiology letters. 2021. 368. 17
Maria Satti, Monica Modesto, Akihito Endo, Takeshi Kawashima, Paola Mattarelli, Masanori Arita. Host-Diet Effect on the Metabolism of Bifidobacterium. GENES. 2021. 12. 4
Mehwish Noureen, Takeshi Kawashima, Masanori Arita. Genetic Markers of Genome Rearrangements in Helicobacter pylori. Microorganisms. 2021. 9. 3
Rutger A Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, et al. BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research. 2020. 9. 136-136

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MISC (15)：

磯和幸延, 更科功, 紀藤圭治, 大島健志朗, 服部正平, 川島武士, 藤江学, 佐藤矩行, 遠藤一佳. 腕足動物における殻体タンパク質のプロテオーム解析. 日本古生物学会年会講演予稿集. 2016. 2016. 44
Kuni Tagawa, Asuka Arimoto, Akane Sasaki, Mizuki Izumi, Satoko Fujita, Tom Humphreys, Asao Fujiyama, Hiroshi Kagoshima, Tadasu Shin-, Yuji Kohara, et al. A cDNA Resource for Gene Expression Studies of a Hemichordate, Ptychodera flava (vol 31, pg 414, 2014). ZOOLOGICAL SCIENCE. 2014. 31. 12. 862-862
黄川田隆洋, GUSEV Oleg, 末次克行, CORNETTE Richard, 川島武士, LOGACHEVA Maria, KONDRASHOV Alexey, KONDRASHOV Alexey, PENIN Aleksey, 畑中理恵, et al. ネムリユスリカゲノムゲノム解析から見えてきた極限環境適応の進化. 日本分子生物学会年会プログラム・要旨集(Web). 2014. 37th. WEB ONLY 2P-0032
佐藤矩行, 坂本竜哉, 坂本浩隆, 遠藤一佳, 後藤太一郎, 鈴木隆仁, 古屋秀隆, 笹倉靖徳, 彦坂(片山)智恵, 川島武士, et al. 全動物門のゲノム解読にむけて 1:総論. 日本動物学会大会予稿集. 2013. 84th. 165
竹内猛, 川島武士, 小柳亮, 行者蕗, 藤江学, 宇佐美剛志, 田中牧子, 生田哲朗, 將口栄一, 藤原真幸, et al. アコヤガイ・ドラフトゲノム解読. 日本水産学会大会講演要旨集. 2011. 2011. 59

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Books (8)：

動物の事典
朝倉書店 2020 ISBN:9784254171662
Encyclopedia of bioinformatics and computational biology
Elsevier 2019 ISBN:9780128114148
Encyclopedia of Zoology
2018
Encyclopedia of Bioinformatics and Computational Biology - 1st Edition
Elsevier 2018
次世代シーケンサー活用術: トップランナーの最新研究事例に学ぶ
化学同人 2015

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Lectures and oral presentations (8)：

オープンサイエンスの代表例DDBJの一員として動物のゲノムを比較解析
(オムニバスセミナー 2019(R1) 2019)
Research for the evolution of metabolic pathways utilizing metabolome data
(The 16th Korea-Japan-China Bioinformatics Symposium 2018 2018)
Highlight Track: Independent evolution of genomic characters during major metazoan transitions
(Highlight Track 2017)
Think about the relationship between zoology and information science in the coming future
(To pioneer the boundary area between zoology and informatics 2017)
Development of a method for annotation of natural compound annotation using transcriptome data
(2017)

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Education (3)：

1996 - 2001 Graduate School of Science, Kyoro Univ.
1992 - 1996 Osaka Prefecture University College of Engineering
雲雀丘学園高等学校

Professional career (1)：

博士(理学) (京都大学理学研究科)

Work history (12)：

2017/03 - 現在 National Institute of Genetics Center for Information Biology Assistant Professor
2016/04 - 2017/02 National Institute of Genetics Center for Information Biology Postdoctoral Researcher
2015/04 - 2016/03 University of Tsukuba Faculty of Life and Environmental Sciences Research Associate
2014/04 - 2015/03 Okinawa Institute of Science and Technology Marinegenomics Unit Staff Scientist III Group Leader
2013/04 - 2015/03 NINS, National Institute of Basic Biology Division of Evolutionary Biology Visiting Scholar

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Committee career (5)：

2017/04 - 現在日本バイオインフォマティクス学会理事
2014/04 - 2019/03 日本バイオインフォマティクス学会幹事
2012/04 - 2016/03 日本バイオインフォマティクス学会理事
2012/01 - 2013/12 日本進化学会庶務幹事
2011/05 - 2013/03 生命情報科学若手の会スタッフ

Association Membership(s) (4)：

JAPAN GEOSCIENCE UNION , JAPANESE SOCIETY FOR BIOINFORMATICS , SOCIETY OF EVOLUTIONARY STUDIES, JAPAN , THE ZOOLOGICAL SOCIETY OF JAPAN

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