Imoto Yusuke

イモトユウスケ | Imoto Yusuke

Affiliation and department：
Job title： Associate Professor
Homepage URL (2)： https://ashbi.kyoto-u.ac.jp/y-imoto/ , https://ashbi.kyoto-u.ac.jp/y-imoto/en/

Research field (3)： Computational science , Applied mathematics and statistics , Basic mathematics

Research keywords (7)： High-dimensional statistics , Statistical Causal Discovery , Topological Data Analysis , Hyper-Dual Numbers , Applied mathematics , Computational Fluid Dynamics , Numerical Analysis

Research theme for competitive and other funds (10)：

2024 - 2032 1細胞ダイナミクスの多層分解による細胞地図の構築
2020 - 2024 Multi-resolution structural analysis system for cell differentiation
2022 - 2023 気象制御のための制御容易性・被害低減効果の定量化
2022 - 2023 超双対数に基づく高精度・高速微分計算理論の構築
2019 - 2021 粒子法の基盤理論整備とマルチフィジックスシミュレータへの展開

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Papers (26)：

Yusuke Imoto. Comprehensive Noise Reduction in Single-Cell Data with the RECODE Platform. 2024
Toshiaki Yachimura, Hanbo Wang, Yusuke Imoto, Momoko Yoshida, Sohei Tasaki, Yoji Kojima, Yukihiro Yabuta, Mitinori Saitou, Yasuaki Hiraoka. scEGOT: Single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. bioRxiv. 2023
Yasuaki Hiraoka, Yusuke Imoto, Killian Meehan, Théo Lacombe, Toshiaki Yachimura. Topological Node2vec: Enhanced Graph Embedding via Persistent Homology. arXiv. 2023
Yusuke Imoto, Yasuaki Hiraoka. V-Mapper: topological data analysis for high-dimensional data with velocity. Nonlinear Theory and Its Applications, IEICE. 2023. 14. 2. 92-105
Yusuke Imoto, Tomonori Nakamura, Emerson G Escolar, Michio Yoshiwaki, Yoji Kojima, Yukihiro Yabuta, Yoshitaka Katou, Takuya Yamamoto, Yasuaki Hiraoka, Mitinori Saitou. Resolution of the curse of dimensionality in single-cell RNA sequencing data analysis. Life Science Alliance. 2022. 5. 12. e202201591-e202201591

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MISC (7)：

松本久也, 井元佑介, 浅井光輝, 三目直登. Development of Bottom Boundary-Fitted Particle Methods Based on Coordinate Transformation. 計算工学講演会論文集(CD-ROM). 2021. 26
藤井孟大, 浅井光輝, 井元佑介. 選択型デュアル流速ISPH法を用いた固液混相流解析の精度検証. 土木学会年次学術講演会講演概要集(CD-ROM). 2020. 75th
藤井孟大, 浅井光輝, 井元佑介. A stabilized ISPH method with dual physical and transport velocity for fluid flow analysis including density variations. 計算工学講演会論文集(CD-ROM). 2020. 25
井元佑介, 浅井光輝. 非圧縮性Navier-Stokes方程式に対する粒子法における安定化項の考察. 日本応用数理学会年会講演予稿集(CD-ROM). 2019. 2019. 349-350
三目直登, TOMICZEK Tori, DONAHUE Aaron, 井元佑介, WESTERINK Joannes, 山田知典, 吉村忍. 2D-3D片方向連成波モデルによる津波再現水槽実験の並列解析. 日本機械学会計算力学講演会論文集(CD-ROM). 2017. 30th. ROMBUNNO.044

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Patents (1)：

データ処理方法、データ処理装置およびデータ処理プログラム

Books (4)：

数理科学2023年6月号高次元データの「かたち」を可視化する: トポロジカルデータ解析手法 Mapper の理論・応用
サイエンス社 2023
いまさら聞けない計算力学の定石
丸善出版 2020
RIMS共同研究 (公開型)「次世代の科学技術を支える数値解析学の基盤整備と応用展開」開催報告
JSIAM Online Magazine 2019
東北大学知のフォーラムの活動と今後の展開
JSIAM Online Magazine 2018

Lectures and oral presentations (28)：

高次元遺伝子発現ダイナミクスのランドスケープ解析
(第66回システム制御情報学会研究発表講演会 2022)
シングルセルデータ科学への招待
(日本数学会 2022年度年会 2022)
Resolution of the curse of dimensionality in single-cell analysis
(2nd ASHBi SignAC Workshop: Integrating Single-cell Analysis and Mathematics 2021)
Topological Trajectory Inference for Single-cell RNA Sequencing Data
(Society for Mathematical Biology Annual Meeting 2021 (SMB2021) 2021)
Single-cell-differentiation inference based on a topological data analysis
(SIAM Conference on Applications of Dynamical Systems (DS21) 2021)

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Education (3)：

2013 - 2016 Kyushu University Faculty of Mathematics, Doctoral course mathemacics & science course
2011 - 2013 Kyushu University Faculty of Mathematics, master's course
2007 - 2011 Kyushu University School of Science Department of Mathematics

Professional career (1)：

Doctor of Mathematics (Kyushu University)

Work history (5)：

2024/04 - 現在 Kyoto University FOREST Principal Investigator
2022/09 - 現在 Kyoto University Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University Institute for Advanced Study (KUIAS) Associate Professor
2020/11 - 2024/03 Japan Science and Technology Agency PRESTO Researcher
2019/02 - 2022/08 Kyoto University Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University Institute for Advanced Study (KUIAS) Assistant professor
2016/04 - 2019/01 Tohoku University Tohoku Forum for Creativity Assistant professor

Committee career (5)：

2021/04 - 現在 Japan Society for Industrial and Applied Mathematics (JSIAM) Committee, Research activity `Topological Data Analysis'
2019/07 - 現在 Japan Society for Industrial and Applied Mathematics (JSIAM) Committee, Research activity `Young Reseachers'
2019/04 - 現在 Japan Society for Industrial and Applied Mathematics (JSIAM) Committee, Research activity `Mathematical Aspects on Continuum Mechanics'
2020/04 - 2024/03 The Japan Society for Industrial and Applied Mathematics Secretary Editors in JSIAM Letters
2019/04 - 2022/03 Japan Society for Industrial and Applied Mathematics (JSIAM) Editorial committee of JSIAM flagship journal

Awards (8)：

2020/09 - JSIAM Paper Price
2019/03 - The Mathematical Society of Japan (MSJ) The 2018 MSJ Prize for Exellent Applied Mathematicians
2018/06 - the Japan society for industrial and applied mathematics (JSIAM) Presentation award on JSIAM Spring meeting 2018,
2016/03/25 - 九州大学九州大学学生表彰(研究)
2015/12 - 土木学会応用力学委員会応用力学シンポジウム講演賞

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Association Membership(s) (3)：

The Japan Society for Computational Engineering and Science , The Japan Society for Industrial and Applied Mathematics , The Mathematical Society of Japan

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