Yusuke Takeda

Affiliation and department：
Job title： Tenure track researcher
Homepage URL (1)： https://ytakeda-paleo.github.io/

Research field (9)： Biogeoscience , Biodiversity and systematics , Evolutionary biology , Morphology, anatomy , Museology , Soft computing , Computer systems , High-performance computing , Web and service informatics

Research keywords (11)：進化生態学 , 生物形態 , イメージング , トモグラフィ , X-ray CT , 可視化・ビジュアリゼーション , コンピューターグラフィックス , ビッグデータ , Biomineralization , Paleontology , Paleoecology

Research theme for competitive and other funds (16)：

2023 - 2026 ”デジタル化石鉱山”の構築:博物館を中核とした新たな自然史研究資源を開拓する
2022 - 2025 Whole human brain pathological analysis by 3D imaging with single cell resolution
2022 - アンモナイト類(絶滅イカ・タコ類)に関する化石解剖学的研究
2020 - 2022 Scientific reconstruction of nature in the Edo period using the Siebold collection
2019 - 2021 Innovations in fossil imaging methods using next-generation tomography equipment

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Papers (12)：

Yoichi Ezaki, Mei Kishida, Yusuke Takeda, Natsuko Adachi, Jianbo Liu, Yasuhiro Iba. Three-dimensional reconstruction of the in situ mode of life of the Cambrian coral Cambroctoconus: asexual reproduction and colony growth in immediate response to cryptic habitats. Papers in Palaeontology. 2023. 9. 3
Mehmet Oguz Derin, Takahiro Harada, Yusuke Takeda, Yasuhiro Iba. Compression and Interactive Visualization of Terabyte Scale Volumetric RGBA Data with Voxel-scale Details. ACM SIGGRAPH 2022 Posters. 2022. 36. 1-2
Mehmet Oguz Derin, Takahiro Harada, Yusuke Takeda, Yasuhiro Iba. Sparse Volume Rendering using Hardware Ray Tracing and Block Walking. SIGGRAPH Asia 2021 Technical Communications. 2021
Davin H. E, Setiamarga, Kazuki Hirota, Masa-aki Yoshida, Yusuke Takeda, Keiji Kito, Makiko Ishikawa, Keisuke Shimizu, Yukinobu Isowa, Kazuho Ikeo, et al. Hydrophilic Shell Matrix Proteins of Nautilus pompilius and The Identification of a Core Set of Conchiferan Domains. Genes. 2021. 12. 12
Davin H. E. Setiamarga, Kazuki Hirota, Masa-aki Yoshida, Yusuke Takeda, Keiji Kito, Keisuke Shimizu, Yukinobu Isowa, Kazuho Ikeo, Takenori Sasaki, Kazuyoshi Endo. Hydrophilic Shell Matrix Proteins of Nautilus pompilius and The Identification of a Core Set of Conchiferan Domains. bioRxiv. 2020

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MISC (5)：

竹田裕介, 伊庭靖弘, 星野健, 臼井寛裕, 深井稜汰. 大規模フルカラートモグラフィデータの3D可視化:ヒトの網膜の解像度を突破する. JAXAスーパーコンピュータシステム利用成果報告(2020年4月~2021年3月). 2021. 492-495
竹田裕介. SPring-8 で化石を調べる ~アンモナイトの顎から太古の生態系の解明に迫る~. SPring-8 News. 2018. 95. 2-4
生野賢司, 相場大佑, 竹田裕介. 第9回国際頭足類シンポジウム(チューリッヒ)参加報告. 化石. 2015. 97. 57-59
竹田裕介, 坂井景, 阿部聡子, 上野恵理子, 鶴見英成. 小石川分館学生ヴォランティア勉強会. 東京大学総合研究博物館機関誌ウロボロス. 2013. 18. 3. 7-8
竹田裕介. ICHNIA 2012(The 3rd International Congress on Ichnology)参加報告. 化石. 2013. 93. 93. 147-149

Lectures and oral presentations (32)：

Voyage into the Devonian Rhynie Chert ecosystem using a new high-resolution imaging technique, MULPIS
(The annual meeting of the Linnean Society Palaeobotany Specialist Group 2023)
超高解像トモグラフィ・3Dレンダリング技術を用いたアエンデ隕石中の難揮発性凝縮物の形状観察
(日本惑星科学会 2023年秋季講演会 2023)
High-Resolution Grinding Tomography of Coarse-Grained Calcium-Aluminum-Rich Inclusions in the Allende Meteorite
(MetSoc 2023 2023)
Three-dimensional reconstruction of the in situ mode of life of embedded Cambrian coralla using grinding tomography
(2nd Asian Palaeontological Congress 2023)
Late Cretaceous Gymnosperm diversity in Hokkaido, Japan: A possible new order based on a permineralized fructification exhibiting new type of seed enclosure and pollentube fertilization
(2nd Asian Palaeontological Congress 2023)

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Works (3)：

macmini cluster wiki
Yusuke Takeda, Rinto Noguchi, Aya Togashi, Yasuhiro Iba 2022 - 現在
uploadmonitor
Yusuke Takeda, Yasuhiro Iba 2022 - 現在
UnzipGD
Yusuke Takeda, Aya Togashi, RInto Noguchi, Yasuhiro Iba 2022 - 現在

Education (3)：

2014 - 2017 University of Tokyo Graduate School of Science PhD course, Department of Earth and Planetary Science
2012 - 2014 University of Tokyo Graduate school of science Master course, Department of Earth and Planetary Science
2008 - 2012 University of Tokyo School of Science Department of Earth and Environmental Science

Professional career (1)：

PhD (University of Tokyo)

Work history (5)：

2024/04 - 現在 Japan Synchrotron Radiation Research Institute Scattering and Imaging Division Tenure track researcher
2021/04 - 2024/04 Hokkaido University Faculty of Science Postdoctoral Fellow
2018/04 - 2021/03 Hokkaido University Faculty of Science JSPS Research Fellow (PD)
2017/04 - 2018/03 University of Tokyo University Museum JSPS Research Fellow (PD)
2016/04 - 2017/03 University of Tokyo Graduate School of Science JSPS Research Fellow (DC2)

Awards (5)：

2022/08 - 北海道大学大学院理学研究院分島亮研究奨励金
2015/12 - Acta Palaeontologica Polonica Editors' Choice
2014/01 - Palaeontological Society of Japan Best Poster Award
2012/08 - International Ichnologinal Association Travel Grant Award
2012/03 - Department of Earth and Planetary Environmental Science, University of Tokyo Best Research Award

Association Membership(s) (5)：

日本放射光学会 , 日本進化学会 , Association for Computing Machinery , JAPAN GEOSCIENCE UNION , PALAEONTOLOGICAL SOCIETY OF JAPAN

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