Hinako Fujikawa, Hiroko X. Kondo, Yusuke Kanematsu, Yu Takano. Random Forest Classifier of Heme Proteins Using Porphyrin Distortions and Axial Ligands of Heme. Chemistry Letters. 2023. 52. 6. 503-507
Hiroko X. Kondo, Haruki Nakamura, Yu Takano. Negative fragmentation approach for investigating the depolarization effect of neighboring residues on hydrogen bonds in π-helix. Chemical Physics Letters. 2023. 815. 140361-140361
Hiroko X. Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano. Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network. Biomolecules. 2023. 13. 1. 137-137
Tomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, Genji Kurisu, Hiroko X. Kondo, Yu Takano. Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations. International Journal of Molecular Sciences. 2022. 23. 24. 15913-15913
Yu Takano, Hiroko X. Kondo, Haruki Nakamura. Quantum chemical studies on hydrogen bonds in helical secondary structures. Biophysical Reviews. 2022. 14. 6. 1369-1378
Hiroko X. Kondo, Noriaki Okimoto, Makoto Taiji. Improvement of Sampling Efficiency through Combined use of Molecular Dynamics Simulations with Implicit and Explicit Solvent Models. BIOPHYSICAL JOURNAL. 2013. 104. 2. 170A-171A
Hiroko Kondo, Noriaki Okimoto, Gentaro Morimoto, Makoto Taiji. Exploration of Free-Energy Profiles With Conformational Changes of Proteins. BIOPHYSICAL JOURNAL. 2010. 98. 3. 26A-26A