Shin-ichi Koda, Shinji Saito. A Correlated Flat-bottom Elastic Network Model for Improved Bond Rearrangement in Reaction Paths. 2024
Shin-ichi Koda, Shinji Saito. A Flat-bottom Elastic Network Model for Generating Improved Plausible Reaction Paths. ChemRxiv. 2024
Shin-ichi Koda, Shinji Saito. Locating Transition States by Variational Reaction Path Optimization with an Energy-Derivative-Free Objective Function. Journal of Chemical Theory and Computation. 2024
Yoshihiko Furuike, Atsushi Mukaiyama, Shin-ichi Koda, Damien Simon, Dongyan Ouyang, Kumiko Ito-Miwa, Shinji Saito, Eiki Yamashita, Taeko Nishiwaki-Ohkawa, Kazuki Terauchi, et al. Regulation mechanisms of the dual ATPase in KaiC. Proceedings of the National Academy of Sciences. 2022. 119. 19. e2119627119
Shin-ichi Koda, Shinji Saito. Multimeric structure enables the acceleration of KaiB-KaiC complex formation induced by ADP/ATP exchange inhibition. PLOS Computational Biology. 2022. 18. 3. e1009243-e1009243
2017/03 - The Journal of Chemical Physics The Journal of Chemical Physics 2016 Editors' Choice Initial-value semiclassical propagators for the Wigner phase space representation: Formulation based on the interpretation of the Moyal equation as a Schrödinger equation.