Takeyuki Tamura, Ai Muto-fujita, Yukako Tohsato, Tomoyuki Kosaka. Gene Deletion Algorithms for Minimum Reaction Network Design by Mixed-Integer Linear Programming for Metabolite Production in Constraint-Based Models: gDel_minRN. Journal of Computational Biology. 2023. 30. 5. 553-568
Ai Muto-Fujita, Kazuhiro Takemoto, Shigehiko Kanaya, Takeru Nakazato, Toshiaki Tokimatsu, Natsushi Matsumoto, Mayo Kono, Yuko Chubachi, Katsuhisa Ozaki, Masaaki Kotera. Data integration aids understanding of butterfly-host plant networks. SCIENTIFIC REPORTS. 2017. 7. 1-14
Hirotada Mori, Rikiya Takeuchi, Yuta Otsuka, Steven Bowden, Katsushi Yokoyama, Ai Muto, Igor Libourel, Barry L. Wanner. Toward network biology in E. Coli cell. Advances in Experimental Medicine and Biology. 2015. 883. 155-168