バンデンボンアレクシス

Vandenbon Alexis

所属機関・部署：
ホームページURL (1件)： https://genomics.virus.kyoto-u.ac.jp/

研究分野 (2件)：ゲノム生物学 , システムゲノム科学

研究キーワード (3件)：空間トランスクリプトミクス , シングルセルトランスクリプトミクス , バイオインフォマティクス

競争的資金等の研究課題 (3件)：

2022 - 2025 細胞種特異的発現を決めるエンハンサー文法の探求
2023 - 2025 空間オミックスデータ解析用データベースの開発
2020 - 2023 Comprehensive optimization of cell type-specific gene co-expression networks and construction of a cell type-specific co-expression database

論文 (48件)：

Yurina Maeshima, Tatsuki R Kataoka, Alexis Vandenbon, Masahiro Hirata, Yasuhide Takeuchi, Yutaka Suzuki, Yukiko Fukui, Masahiro Kawashima, Masahiro Takada, Yumiko Ibi, et al. Intra-patient spatial comparison of non-metastatic and metastatic lymph nodes reveals the reduction of CD169+ macrophages by metastatic breast cancers. EBioMedicine. 2024. 107. 105271-105271
Martin Loza, Alexis Vandenbon, Kenta Nakai. Epigenetic characterization of housekeeping core promoters and their importance in tumor suppression. Nucleic acids research. 2024. 52. 3. 1107-1119
Takuya Uehata, Shinnosuke Yamada, Daisuke Ori, Alexis Vandenbon, Amir Giladi, Adam Jelinski, Yasuhiro Murakawa, Hitomi Watanabe, Kazuhiro Takeuchi, Kazunori Toratani, et al. Regulation of lymphoid-myeloid lineage bias through Regnase-1/3-mediated control of Nfkbiz. Blood. 2023
Shinya Abe, Takuma Asahi, Takahiro Hara, Guangwei Cui, Akihiro Shimba, Shizue Tani-Ichi, Kohei Yamada, Kazuko Miyazaki, Hitoshi Miyachi, Satsuki Kitano, et al. Hematopoietic cell-derived IL-15 supports NK cell development in scattered and clustered localization within the bone marrow. Cell reports. 2023. 42. 9. 113127-113127
Alexis Vandenbon, Diego Diez. A universal tool for predicting differentially active features in single-cell and spatial genomics data. Scientific reports. 2023. 13. 1. 11830-11830

MISC (1件)：

書籍 (1件)：

講演・口頭発表等 (24件)：

DeepSpaceDB: an Interactive Database for Spatial Transcriptomics Data
(30th East Asia Joint Symposium 2024)
DeepSpaceDB: a spatial transcriptomics atlas for interactive in-depth analysis of tissues and tissue microenvironments
(Asia & Pacific Bioinformatics Joint Conference 2024 2024)
DeepSpaceDB: a spatial transcriptomics atlas that allows interactive in-depth analysis of tissues and tissue microenvironments
(NGS EXPO 2024 2024)
SingleCellHaystack: A universal tool for predicting differentially active features in single-cell and spatial genomics data
(第46回日本分子生物学会年会 2023)
SingleCellHaystack: A universal differential expression prediction tool for single-cell and spatial genomics data
(GIW ISCB-Asia 2023)

経歴 (4件)：

受賞 (4件)：

2024/10 - Asia & Pacific Bioinformatics Joint Conference 2024 Best Poster Award
2023 - GIW ISCB-Asia conference Best Poster Award
2021 - IIBMP2021 conference Best Poster Award
2019 - Japanese Society of Bioinformatics Oxford Journals - Japanese Society for Bioinformatics Prize

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バンデンボン アレクシス