文献

J-GLOBAL ID：201802295835092423   整理番号：18A1114873

トウガラシの新しい参照ゲノム配列はレトロ複製による植物病害抵抗性遺伝子の大量進化を明らかにする【JST・京大機械翻訳】

New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication

著者 (47件)： Kim Seungill (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Park Jieun (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Park Jieun (Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea) ,  Yeom Seon-In (Department of Agricultural Plant Science, Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, South Korea) ,  Kim Yong-Min (Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejon, South Korea) ,  Seo Eunyoung (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Kim Ki-Tae (Department of Agricultural Biotechnology, Seoul National University, Seoul, South Korea) ,  Kim Myung-Shin (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee Je Min (Department of Horticultural Science, Kyungpook National University, Daegu, South Korea) ,  Cheong Kyeongchae (Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea) ,  Cheong Kyeongchae (Department of Agricultural Biotechnology, Seoul National University, Seoul, South Korea) ,  Shin Ho-Sub (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Kim Saet-Byul (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Han Koeun (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Han Koeun (Vegetable Breeding Research Center, Seoul National University, Seoul, South Korea) ,  Lee Jundae (Department of Horticulture, Chonbuk National University, Jeonju, South Korea) ,  Park Minkyu (Department of Genetics, University of Georgia, Athens, USA) ,  Lee Hyun-Ah (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee Hye-Young (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee Youngsill (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Oh Soohyun (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee Joo Hyun (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Choi Eunhye (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Choi Eunbi (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee So Eui (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Jeon Jongbum (Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea) ,  Kim Hyunbin (Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea) ,  Choi Gobong (Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea) ,  Song Hyeunjeong (Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea) ,  Lee JunKi (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee Sang-Choon (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Kwon Jin-Kyung (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Kwon Jin-Kyung (Vegetable Breeding Research Center, Seoul National University, Seoul, South Korea) ,  Lee Hea-Young (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee Hea-Young (Vegetable Breeding Research Center, Seoul National University, Seoul, South Korea) ,  Koo Namjin (Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejon, South Korea) ,  Hong Yunji (Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejon, South Korea) ,  Kim Ryan W. (Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejon, South Korea) ,  Kang Won-Hee (Department of Agricultural Plant Science, Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, South Korea) ,  Huh Jin Hoe (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Kang Byoung-Cheorl (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Kang Byoung-Cheorl (Vegetable Breeding Research Center, Seoul National University, Seoul, South Korea) ,  Yang Tae-Jin (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea) ,  Lee Yong-Hwan (Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea) ,  Lee Yong-Hwan (Department of Agricultural Biotechnology, Seoul National University, Seoul, South Korea) ,  Bennetzen Jeffrey L. (Department of Genetics, University of Georgia, Athens, USA) ,  Choi Doil (Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea)
資料名： Genome Biology (Web)  (Genome Biology (Web))
巻： 18  号： 1  ページ： 210  発行年： 2017年 
JST資料番号： U7384A  ISSN： 1474-760X  資料種別： 逐次刊行物 (A)
記事区分： 原著論文  発行国： イギリス (GBR)  言語： 英語 (EN)

抄録/ポイント： 転移性要素は,新しいゲノム構造と種多様化を引き起こすことができる主要な進化力である。ヌクレオチド結合とロイシンに富む反復蛋白質(NLRs),主要な疾患耐性遺伝子ファミリーの拡大における転移性要素の役割は,植物において調査されていない。著者らは2つの高品質de novoゲノム(Capsicum baccatumとC.chinense)とトウガラシのための改良参照ゲノム(C.annuum)を報告する。染色体3,5と9の間の転座を含む動的ゲノム再編成を,C.baccatumと2つの他のコショウの間の比較において検出した。Athila LTR-レトロトランスポゾンの増幅は,gypsyスーパーファミリーのメンバーで,C.baccatumにおけるゲノム拡大をもたらした。遺伝子と反復の徹底的な全ゲノム比較により,NLRのコピー数がLTRレトロトランスポゾン仲介レトロ複製により大きく増加することを明らかにした。さらに,レトロ複製されたNLRsは被子植物を横切って豊富であり,ほとんどの場合,系統特異的である。著者らの研究は,レトロ複製が,コショウ植物における機能的な耐病性遺伝子を含むNLR遺伝子の大量発生に対して重要な役割を果たしていることを明らかにする。Copyright 2018 The Author(s). All rights reserved. Translated from English into Japanese by JST.【JST・京大機械翻訳】

シソーラス用語： *遺伝子 ,  転座 ,  *植物病害 ,  多様化 ,  *トウガラシ ,  コショウ ,  転移性遺伝要素 ,  レトロトランスポゾン ,  耐病性遺伝子 ,  *ゲノム ,  コピー数 ,  タンパク質 ,  脂肪族アミン ,  脂肪族カルボン酸 ,  分枝鎖アミノ酸
準シソーラス用語： 耐性遺伝子 ,  *ゲノム配列 , 【Automatic Indexing@JST】

著者キーワード (5件)： NLR ,  レトロ複製 ,  LTRレトロトランスポゾン ,  疾患耐性遺伝子 ,  ゲノム進化

分類 (2件)： 遺伝子の構造と化学  (EC02020U) ,  進化論一般  (EC03010Q)

物質索引 (1件)： ロイシン

引用文献 (65件)：

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• Nat Rev Genet; RNA-based gene duplication: mechanistic and evolutionary insights; H Kaessmann, N Vinckenbosch, M Long; 10; 2009; 19-31; 10.1038/nrg2487; citation_id=CR2
• Plant Cell; High rate of chimeric gene origination by retroposition in plant genomes; W Wang, H Zheng, C Fan, J Li, J Shi, Z Cai; 18; 2006; 1791-802; 10.1105/tpc.106.041905; citation_id=CR3
• Sci Rep; LINE-1-like retrotransposons contribute to RNA-based gene duplication in dicots; Z Zhu, S Tan, Y Zhang, YE Zhang; 6; 2016; 24755; 10.1038/srep24755; citation_id=CR4
• Nature; Pack-MULE transposable elements mediate gene evolution in plants; N Jiang, ZR Bao, XY Zhang, SR Eddy, SR Wessler; 431; 2004; 569-73; 10.1038/nature02953; citation_id=CR5

タイトルに関連する用語 (6件)： トウガラシ ,  参照ゲノム ,  複製 ,  植物病害 ,  抵抗性遺伝子 ,  進化