Okamura Kohji

オカムラコウジ | Okamura Kohji

Affiliation and department：
Job title：室長
Homepage URL (1)： https://aihospital.ncchd.go.jp/okamura/

Research field (8)： Genetics , Molecular biology , Genomics , Systems genomics , Software , Biological, health, and medical informatics , Information security , Basic physical chemistry

Research keywords (9)： gene regulation , genomic imprinting , retrotransposition , DNA methylation , molecular evolution , bacteria , physical chemistry , deep learning , information security

Research theme for competitive and other funds (6)：

2023 - 2026 クラウド上の医療AI利用促進のためのネットワークセキュリティ構成類型化と実証及び施策の提言
2021 - 2024 細胞のリプログラミングによるDNAメチル化変化を利用した遺伝子発現制御の理解
2016 - 2019 iPS細胞誘導によるクローン性を利用したドライバーおよびパッセンジャー変異の検出
2011 - 2015 プロモータ領域のメチル化を利用した遺伝子発現制御の進化的な獲得
2008 - 2010 Identification of de novo DNA methylation signal by comparative genomics

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Papers (73)：

Matsubara K, Ohgami Y, Okamura K, Aoto S, Fukami M, Shimada Y. Machine learning trial to detect sex differences in simple sticker arts of 1606 preschool children. Minerva Pediatr. 2024. 76. 3. 343-349
Hattori A, Seki A, Inaba N, Nakabayashi K, Takeda K, Tatsusmi K, Naiki Y, Nakamura A, Ishiwata K, Matsumoto K, et al. Expression levels and DNA methylation profiles of the growth gene SHOX in cartilage tissues and chondrocytes. Sci. Rep. 2024. 14. 1. 8069
Amano N, Narumi S, Aizu K, Miyazawa M, Okamura K, Ohashi H, Katsumata N, Ishii T, Hasegawa T. Single-exon deletions of ZNRF3 exon 2 cause congenital adrenal hypoplasia. J. Clin. Endocrinol. Metab. 2024. 109. 3. 641-648
Kawano T, Okamura K, Shinchi H, Ueda K, Nomura T, Shiba K. Differentiation of large extracellular vesicles in oral fluid: combined protocol of small force centrifugation and sedimentation pattern analysis. J. Extracell. Biol. 2024. 3. 2. e143
Uchiyama T, Kawai T, Nakabayashi K, Nakazawa Y, Goto F, Okamura K, Nishimura T, Kato K, Watanabe N, Miura A, et al. Myelodysplasia after clonal hematopoiesis with APOBEC3-mediated CYBB inactivation in retroviral gene therapy for X-CGD. Mol. Ther. 2023. 31. 12. 3424-3440

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Patents (4)：

Materials and methods for glycan profiling
非破壊的な細胞解析方法
細胞判定装置、細胞判定方法及びプログラム
Memory management

Books (6)：

スプレッドシートに代わる関係データベースの活用
メディカルドゥ遺伝子医学通巻43号 2023 ISBN:9784909508218
Understanding the contribution of deep learning to the future of genetic counseling
Japanese Journal of Genetic Counseling 2022
間葉系幹細胞研究を変えつつある人工知能
医歯薬出版医学のあゆみ第272巻10号, 1064-1068 (ASIN: B0851M9H94) 2020
Understanding deep learning by a glimpse of a future genome database
Medical Do 2019 ISBN:9784909508027
Handbook of Human Molecular Evolution
Wiley 2008

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Lectures and oral presentations (35)：

Identification of lagomorph core promoter regions using human transcription start sites
(第17回日本エピジェネティクス研究会年会 2024)
Open-source and community-level development of a web application of animal experiments
(第154回関西実験動物研究会 2024)
Changes in gene expression and DNA methylation during longitudinal aging in a human individual
(第41回日本ヒト細胞学会学術集会 2023)
Understanding deep learning to contribute to the future of genetic counseling
(第46回日本遺伝カウンセリング学会学術集会 2022)
Genome-wide identification of polymorphisms between C57BL/6 and JF1 and allele-specific expression analyses
(第35回日本分子生物学会年会 2012)

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Education (3)：

1999 - 2003 University of Tokyo Graduate School of Medicine Department of Molecular Cell Biology
1994 - 1996 Tohoku University Graduate School of Science Department of Chemistry
1990 - 1994 Tohoku University Faculty of Science Department of Chemistry

Professional career (2)：

Master of Science (Tohoku University)
Ph.D. (The University of Tokyo)

Work history (12)：

2021 - 現在 Mie University Graduate School of Medicine Associate professor
2012 - 現在 National Center for Child Health and Development Department of Systems BioMedicine Division chief
2015 - 2018 Kyoto University Graduate School of Medicine Visiting researcher
2012 - 2013 Waseda University School of Social Sciences Part-time lecturer
2011 - 2013 Tsukuba University Graduate School of Comprehensive Human Sciences Part-time lectuler

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Committee career (1)：

学際生命科学東京コンソーシアム教育高度化部会委員

Awards (1)：

2011/12 - Asia Pacific Bioinformatics Network Best Paper Award (InCob 2011) Profiling ascidian promoters as the primordial type of vertebrate promoter

Association Membership(s) (3)：

日本エピジェネティクス研究会 , 日本バイオインフォマティクス学会 , 日本分子生物学会

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