Maruyama Osamu

マルヤマオサム | Maruyama Osamu

Affiliation and department：
Job title： Associate Professor
Homepage URL (1)： http://www.design.kyushu-u.ac.jp/~maruyama/

Research field (3)： Intelligent informatics , Information theory , Biological, health, and medical informatics

Research keywords (33)：アルゴリズム , 学習 , ゲノム , 探索アルゴリズム , ランダム , グラフ , タンパク質 , yeast , 系統情報 , multiple unordered motif , 対数尤度 , シグナル配列 , view , DNAシグナル , プロファイル , 転写因子結合部位 , モチーフ発見 , bit operation , 系統樹 , パターン探索 , 属性創造 , 選択的スプライシング , DNA , 構造モチーフ , 局所情報 , 枝刈り , 類似度 , 制御配列 , 復元 , 発見方式 , バイオインフォマティクス , computational biology , bioinformatics

Research theme for competitive and other funds (20)：

2021 - 2025 Mathematical analysis and applications in the 3D genome
2019 - 2024 Diversity and similarity of neural representation associated with conscious experience of color
2018 - 2023 Omics approaches towards the elucidation of the molecular network regulating the developmental capacity of the mammalian oocyte
2017 - 2021 Study on machine learning approaches for heterogeneous biological data based on mixing regularization models
2014 - 2016 Mixture modeling of regularization terms with optimization sampling strategies and its application to biological large scale data

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Papers (47)：

Osamu Maruyama, Yinuo Li, Hiroki Narita, Hidehiro Toh, Wan Kin Au Yeung, Hiroyuki Sasaki. CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers. BMC bioinformatics. 2022. 23. 1. 371-371
Wan Kin Au Yeung, Osamu Maruyama, Hiroyuki Sasaki. A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns. BMC Bioinformatics. 2021. 22. 1. 341-341
MARUYAMA Osamu, Fumiko Matsuzaki. DegSampler3: Pairwise Dependency Model in Degradation Motif Site Prediction of Substrate Protein Sequences. Proc. of 19th IEEE International Conference on Bioinformatics and Bioengineering. 2019
Natsu Nakajima, Morihiro Hayashida, Jesper Jansson, Osamu Maruyama, Tatsuya Akutsu. Determining the minimum number of protein-protein interactions required to support known protein complexes. PLoS ONE. 2018. 13. 4. e0195545
Osamu Maruyama, Fumiko Matsuzaki. DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites. 18th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2018, Taichung, Taiwan, October 29-31, 2018. 2018. 1-9

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MISC (55)：

Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu. Prediction of Heterotrimeric Protein Complexes by Two-phase Learning Using Neighboring Kernels. IPSJ SIG Notes. 2014. 2014. 26. 1-5
Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu. Prediction of Heterotrimeric Protein Complexes by Two-phase Learning Using Neighboring Kernels. IPSJ SIG technical reports. 2014. 2014. 26. 1-5
Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu. Prediction of Heterodimeric Protein Complexes from Weighted Protein-Protein Interaction Networks Using Novel Features and Kernel Functions. IPSJ SIG technical reports. 2013. 2013. 1. 1-6
KUSUMASTUTI WIDITA Chasanah, MARUYAMA Osamu. Predicting Protein Complexes by Sampling More Accurately and Efficiently. 2013. 113. 286. 99-106
Yukio Yasukochi, Osamu Maruyama, Milind C. Mahajan, Carolyn Padden, Ghia M. Euskirchen, Vincent Schulz, Hideki Hirakawa, Satoru Kuhara, Xing-Hua Pan, Peter E. Newburger, et al. X chromosome-wide analyses of genomic DNA methylation states and gene expression in male and female neutrophils. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2010. 107. 8. 3704-3709

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Books (2)：

バイオインフォマティクス -配列データ解析と構造予測- (シリーズ〈予測と発見の科学〉 4)
朝倉書店 2007 ISBN:9784254127843
Bioinformatics - sequence data analysis and structural prediction (in Japanese)
Asakura 2007 ISBN:9784254127843

Education (4)：

- 1996 Kyushu University
- 1996 Kyushu University Graduate School, Division of Integrated Science and Engineering
- 1991 Kyushu University School of Sciences Department of Physics
- 1991 Kyushu University Faculty of Science Physics

Professional career (1)：

Dr. Sci (Kyushu University)

Work history (4)：

2007/04 - 現在 Kyushu University
2000/05 - 2007/03 Kyushu University
1996 - 2000 The University of Tokyo
1996 - 2000 University of Tokyo, Research Associate

Awards (1)：

1994 - 電気通信普及財団第9回テレコムシステム技術学生賞

Association Membership(s) (3)：

THE INSTITUTE OF ELECTRONICS, INFORMATION AND COMMUNICATION ENGINEERS , International Society for Computational Biology , 日本バイオインフォマティクス学会

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