AYORI MITSUTAKE

ミツタケアヨリ | AYORI MITSUTAKE

Affiliation and department：
Job title： Associate Professor

Research field (3)： Biological, health, and medical informatics , Bio-, chemical, and soft-matter physics , Biophysics

Research keywords (6)：緩和モード解析 , 拡張アンサンブル法 , 統計物理学 , 生体高分子 , 分子シミュレーション , ダイナミクス

Research theme for competitive and other funds (17)：

2020 - 2025 Estimation of stability and functional changes due to amino acid substitution using molecular simulations
2022 - 2024 The mechanism of orexin receptors using molecular dynamics simulations
2016 - 2019 Novel characterization of rare events in dynamic data and its application to biological time series
2013 - 2017 緩和モード解析によるタンパク質構造ダイナミクスの解明
2013 - 2014 緩和モード解析による蛋白質の構造揺らぎの動的特徴

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Papers (79)：

Shun Yokoi, Ryoji Suno, Ayori Mitsutake. Structural and Computational Insights into Dynamics and Intermediate States of Orexin 2 Receptor Signaling. The journal of physical chemistry. B. 2024
Yutaka Maruyama, Ryo Igarashi, Yoshitaka Ushiku, Ayori Mitsutake. Analysis of Protein Folding Simulation with Moving Root Mean Square Deviation. J. Chem. Inf. Model. 2023. 63. 5. 1529-1541
Hiroshi Fujisaki, Hiromichi Suetani, Luca Maragliano, Ayori Mitsutake. Non-Markov-Type Analysis and Diffusion Map Analysis for Molecular Dynamics Trajectory of Chignolin at a High Temperature. Life. 2022
Norio Yoshida, Yutaka Maruyama, Ayori Mitsutake, Akiyoshi Kuroda, Ryo Fujiki, Kodai Kanemaru, Daisuke Okamoto, Alexander E. Kobryn, Sergey Gusarov, Haruyuki Nakano. Computational Analysis of the SARS-CoV-2 RBD-ACE2-Binding Process Based on MD and the 3D-RISM Theory. Journal of Chemical Information and Modeling. 2022. 62. 11. 2889-2898
Yutaka Maruyama, Ayori Mitsutake. Structural Stability Analysis of Proteins Using End-to-End Distance: A 3D-RISM Approach. J. 2022. 5. 1. 114-125

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MISC (18)：

Shun Yokoi, Ayori Mitsutake. Characteristic structural difference between inactive and active states of orexin 2 receptor determined using molecular dynamics simulations. Biophysical Reviews. 2021
Fujisaki Hiroshi, Suetani Hiromichi, Mitsutake Ayori. How can we extract reaction coordinates from molecular dynamics simulations of biomolecules?. Meeting Abstracts of the Physical Society of Japan. 2017. 72. 0. 3237-3237
Fujisaki Hiroshi, Mitsutake Ayori. 19pBW-11 Rate calculations for conformational change of biomolecules using the milestoning method. Meeting Abstracts of the Physical Society of Japan. 2016. 71. 0. 3181-3181
MITSUTAKE AYORI. Effective Sampling Algorithms and Analysis Methods for Molecular Simlations of Proteins. 日本物理学会学会誌. 2015. 70. 3. 194-199
Kaneko Toshihiro, Bai Jaeil, Yasuoka Kenji, Mitsutake Ayori, Zeng Xiao Cheng. 27pAB-11 Phase Transition of Water Confined in Slit Pores. Meeting abstracts of the Physical Society of Japan. 2014. 69. 1. 397-397

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Books (1)：

Lectures and oral presentations (91)：

リングポリマーブラシの静的・動的特性
(日本物理学会2017年年次大会 2017)
緩和モード解析による200残基程度の蛋白質のマイクロ秒程度の分子シミュレーションの動的解析
(日本物理学会2017年年次大会 2017)
生体分子の分子シミュレーションから反応座標をどう抜き出すか?
(日本物理学会2017年年次大会 2017)
分子動力学法を用いたタンパク質の緩和モード解析II
(日本物理学会2017年年次大会 2017)
Improved Relaxation Mode Analysis of a Hen Egg-white Lysozyme Protein
(Biophysical Society 61st Annual Meeting 2017)

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Professional career (1)：

Work history (10)：

2018/04 - 現在 Meiji University
2013/10 - 2017/03/31 さきがけ研究者(併任)
2012/04 - 大学専任講師
2001/04 - 2012/03 Assistant Professor
2006/04 - 2007/03 Sabbatical in Professor Charles L. Brooks,III Group, Department of Molecular Biology, The Scripps Research Institute

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Committee career (9)：

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Awards (2)：

Association Membership(s) (4)：

蛋白質科学会 , 日本物理学会 , 日本生物物理学会 , 分子シミュレーション研究会

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