Rchr
J-GLOBAL ID:200901017800293020   Update date: May. 01, 2023

Ikeda Masami

イケダ マサミ | Ikeda Masami
Research keywords  (5): Bioinformatics ,  Protein science ,  計算生命科学 ,  Biophysics ,  Biological database
Research theme for competitive and other funds  (1):
  • 2019 - 2023 Technology development and application for cell surface visual proteomics
Papers (30):
  • Nozomi Nagano, Narumi Tokunaga, Masami Ikeda, Hiroko Inoura, Duong A Khoa, Makoto Miwa, Mohammad G Sohrab, Goran Topić, Mari Nogami-Itoh, Hiroya Takamura. A novel corpus of molecular to higher-order events that facilitates the understanding of the pathogenic mechanisms of idiopathic pulmonary fibrosis. Scientific reports. 2023. 13. 1. 5986-5986
  • Mohammad Golam Sohrab, Khoa Duong, Ikeda Masami, Goran Topic, Yayoi Natsume-Kitatani, Masakata Kuroda, Mari Nogami Itoh, Hiroya Takamura. BiomedCurator: Data Curation for Biomedical Literature. AACL/IJCNLP (System Demonstrations). 2022. 63-71
  • Kazuyoshi Ikeda, Takuo Doi, Masami Ikeda, Kentaro Tomii. PreBINDS: An Interactive Web Tool to Create Appropriate Datasets for Predicting Compound-Protein Interactions. Frontiers in molecular biosciences. 2021. 8. 758480-758480
  • Mohammad Golam Sohrab, Khoa Duong, Makoto Miwa, Goran Topic, Ikeda Masami, Hiroya Takamura. BENNERD: A Neural Named Entity Linking System for COVID-19. Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing: System Demonstrations. 2020. 182-188
  • Tatsuki Kikegawa, Takuya Yamaguchi, Ryohei Nambu, Kenji Etchuya, Masami Ikeda, Yuri Mukai. Signal-anchor sequences are an essential factor for the Golgi-plasma membrane localization of type II membrane proteins. Bioscience, biotechnology, and biochemistry. 2018. 82. 10. 1708-1714
more...
MISC (1):
  • 長野 希美, 池田 修己, 三輪 誠, 坂田 一郎, 浅谷 公威, 大知 正直, 市瀬 龍太郎. 人工知能による科学技術研究の加速. 人工知能. 2019. 34. 6. 783-789
Patents (3):
  • GPIアンカー型タンパク質の判定装置、判定方法及び判定プログラム
  • 立体構造データ帰属方法、立体構造データ帰属プログラム及び立体構造データ帰属装置
  • GPIアンカー型タンパク質の判別装置、判別方法及びプログラム
Lectures and oral presentations  (7):
  • BiomedCurator:医学・生物学文献からの構造化データ抽出のためのデータキュレーションシステムの開発.
    (言語処理学会 第29回年次大会 2023)
  • BiomedCurator: Data Curation for Biomedical Literature.
    (2nd Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics and the 12th International Joint Conference on Natural Language Processing (AACL-IJCNLP2022) 2022)
  • BENNERD: A neural named entity linking system for COVID-19.
    (Conference on Empirical Methods in Natural Language Processing (EMNLP2020) 2020)
  • Development of membrane protein family identifier by collating EM images and atomic coordinate data.
    (2020)
  • Determination of key regions relating GPCR - G-protein coupling selectivity and their application for predicting coupling G-protein kinds.
    (2019)
more...
Professional career (1):
  • 博士(農学) (岩手大学)
Association Membership(s) (3):
INFORMATION PROCESSING SOCIETY OF JAPAN ,  THE BIOPHYSICAL SOCIETY OF JAPAN ,  JAPANESE SOCIETY FOR BIOINFORMATICS
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