Rchr
J-GLOBAL ID:200901019405653975
Update date: Dec. 09, 2024
Shinoda Wataru
シノダ ワタル | Shinoda Wataru
Affiliation and department:
Research field (2):
Basic physical chemistry
, Bio-, chemical, and soft-matter physics
Research keywords (1):
Molecular simulation, multiscale modeling, lipid membrane, biological membrane, self-assembly, liposome, lipid nanoparticles, drug delivery carrier, virus capsid, polymer materials, polymer electrolytes
Research theme for competitive and other funds (8):
- 2024 - 2029 Development of Applications of Engineered Lipid Particles
- 2024 - 2027 膜透過の計算科学:膜モジュレータの作用と核酸透過機構の解明
- 2024 - 2027 細胞膜をゆらす核酸医薬の膜透過機構の総合理解と膜透過学の創成
- 2023 - 2026 Average orientation of lipid acyl chains in the domain structure of model membranes
- 2021 - 2025 Molecular Dynamics of Intracellular Transport of Lipid Nanoparticles: Molecular mechanism of endosomal escape of nucleic acids
- 2016 - 2021 Dynamic conformation and domain structure of lipid molecules in model biomembranes
- 2014 - 2016 Environment-dependent force fields for complex biological systems based on very large-scale first-principles calculations
- 2011 - 2015 Multiscale Molecular Modeling of Membrane Fusion
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Papers (164):
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Kevin A. Alberto, M. N. Hasna Begam, Hejian Xiong, Wataru Shinoda, Paul A. Slesinger, Zhenpeng Qin, Steven O. Nielsen. Fully atomistic molecular dynamics modeling of photoswitchable azo-PC lipid bilayers: structure, mechanical properties, and drug permeation. Nanoscale. 2025
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Yuichi Umegawa, Hiroshi Tsuchikawa, Wataru Shinoda, Michio Murata. NMR and molecular simulation studies on the structure elucidation of the amphotericin B ion channel using 13C and 19F labelling. Organic & Biomolecular Chemistry. 2025
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Toru Ishikawa, Shohei Haga, Keisuke Shigenobu, Taku Sudoh, Seiji Tsuzuki, Wataru Shinoda, Kaoru Dokko, Masayoshi Watanabe, Kazuhide Ueno. Linear ether-based highly concentrated electrolytes for Li-sulfur batteries. Faraday Discussions. 2024. 253. 385-406
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Frederik Philippi, Maleen Middendorf, Keisuke Shigenobu, Yuna Matsuyama, Oriele Palumbo, David Pugh, Taku Sudoh, Kaoru Dokko, Masayoshi Watanabe, Monika Schönhoff, et al. Evolving better solvate electrolytes for lithium secondary batteries. Chemical Science. 2024. 15. 19. 7342-7358
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Kunanon Chattrairat, Akira Yokoi, Min Zhang, Mikiko Iida, Kosuke Yoshida, Masami Kitagawa, Ayuka Niwa, Masatoshi Maeki, Takeshi Hasegawa, Takeshi Yokoyama, et al. Discrimination of extracellular miRNA sources for the identification of tumor-related functions based on nanowire thermofluidics. Device. 2024. 12. 100363-100363
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MISC (65):
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KEERATISAKULSITH Tanatchphong, UMEGAWA Yuichi, TSUCHIKAWA Hiroshi, HANASHIMA Shinya, MURATA Michio, SHINODA Wataru. Elucidation of inter-leaflet coupling in asymmetric membranes induced by very long chain sphingomyelin based on solid-state NMR. 日本化学会春季年会講演予稿集(Web). 2021. 101st
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浦野諒, 藤本和士, 安藤嘉倫, 吉井範行, 篠田渉, 岡崎進. B型肝炎ウイルス(HBV)への逆転写阻害薬剤分子のカプシド内部の自由エネルギー計算. 分子科学討論会講演プログラム&要旨(Web). 2019. 13th
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武田康助, 安藤嘉倫, 篠田渉, 岡崎進, 岡崎進. 分子動力学計算による界面活性剤含水ラメラの構造決定および分子挙動に関する研究. 分子シミュレーション討論会講演要旨集. 2019. 33rd
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浦野諒, 藤本和士, 安藤嘉倫, 吉井範行, 篠田渉, 岡崎進. B型肝炎ウイルス(HBV)への逆転写阻害薬剤分子の自由エネルギー計算によるカプシド内部への吸収・透過機構の解明. 分子シミュレーション討論会講演要旨集. 2019. 33rd
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山本智也, 山本智也, 梅川雄一, 梅川雄一, 中川泰男, 鈴木大河, 山上正輝, 土川博史, 花島慎弥, 村田道雄, et al. Structure Elucidation of Ion Channel Assembly Formed by Amphotericin B and Sterol. 天然有機化合物討論会講演要旨集(Web). 2018. 60th
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Lectures and oral presentations (2):
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Simulating Endosomal Escape of Lipid Nanoparticles
(The 6th International Conference on Molecular Simulation (ICMS2023) 2023)
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Coarse Grained Molecular Dynamics Study on Endosomal Escape of dsDNA Encapsulated in Lipid Nanoparticles using the SPICA Force Field
(CECAM workshop: Macromolecular complexes: from ab initio and integrative modelling to functional dynamics 2023)
Education (1):
- 1995 - 1998 Tokyo Institute of Technology
Professional career (1):
Work history (7):
- 2021/10 - 現在 Okayama University The Research Institute for Interdisciplinary Science Professor
- 2014/01 - 2021/09 Nagoya University Graduate School of Engineering Associate Professor
- 2001/04 - 2013/12 National Institute of Advanced Industrial Science and Technology
- 2005/04 - 2007/03 University of Pennsylvania Department of Chemistry Visiting Scholar
- 2000/04 - 2001/03 National Institute of Materials and Chemical Research
- 1998/04 - 2000/03 Mitsubishi Chemical Corporation
- 1995/04 - 1998/03 Japan Society for the Promotion of Science Research fellow (DC1)
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Association Membership(s) (8):
分子シミュレーション学会
, 日本化学会
, 理論化学会
, American Chemical Society
, 溶液化学研究会
, JAPAN SOCIETY FOR MOLECULAR SCIENCE
, THE SOCIETY OF POLYMER SCIENCE, JAPAN
, THE BIOPHYSICAL SOCIETY OF JAPAN
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