YOSHIZAWA Akiyasu C.

ヨシザワアキヤス | YOSHIZAWA Akiyasu C.

Affiliation and department：
Job title： Project Associate Professor

Research field (3)： Biological, health, and medical informatics , Systems genomics , Biophysics

Research keywords (4)： bioinformatics (computational biology) , database , comparative genomics , mass spectrometry

Research theme for competitive and other funds (15)：

2023 - 2024 Development of an automated and quick genome annotation tool for omics analysis
2022 - 2023 Development of a web tool for sequence information acquisition and the novel amino acid sequence identification resource against whole genome sequence data using high-speed character string search
2020 - 2023 Development of novel methodology for amino acid de novo sequencing by mass spectrometry
2021 - 2022 Development of the novel amino acid sequence identification resource against whole genome sequence data by high-speed character string search
2020 - 2021 Development of the novel amino acid sequence identification resource against whole genome sequence data by high-speed character string search

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Papers (30)：

Watanabe, Y, Yoshizawa, AC, Ishihama, Y, Okuda, S. The jPOST Repository as a Public Data Repository for Shotgun Proteomics. Methods in Molecular Biology. 2021. 2259. 309-322
Oka, M, Xu, L, Suzuki, T, Yoshikawa, T, Sakamoto, H, Uemura, H, Yoshizawa, AC, Suzuki, Y, Nakatsura, T, Ishihama, Y, et al. Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer. Genome Biology. 2021. 22. 9
Yamamoto, H, Hayakawa, E, Tsugawa, H, Moriya, Y, Fukusaki, E, Goto, S, Hasunuma, T, Miura, N, Yoshizawa, AC. Japan Computational Mass Spectrometry Meeting 2020 Activity Report. Journal of Proteome Data and Methods. 2020. 2. 5
Tabata, T, Yoshizawa, AC, Ishihama, Y. jPOST Tools (I): Utilities for Peak List Processing. Journal of Proteome Data and Methods. 2020. 2. 4
Vos RA, Katayama T, Mishima H, Kawano S, KawashimaS, Kim J-D, Moriya Y, Tokimatsu T, Yamaguchi A, Yamamoto Y, et al. BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research. 2020. 9. 136

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MISC (38)：

吉沢明康, 田畑剛, 岩崎未央, 杉山直幸, Kaell Lukas, 石濱泰. 事後ペプチドシーケンスタグの利用によるタンパク質同定の精度向上. 電気泳動. 2019. 63. Suppl. 245-245
上村駿人, 伊藤麻里子, 吉沢明康, 杉山直幸, 石濱泰. メタプロテオミクスのためのデータ解析ワークフロー開発. 日本薬学会年会要旨集(CD-ROM). 2018. 138年会. 2. 240-240
吉沢明康. Construction of proteome database. 京都大学化学研究所スーパーコンピュータシステム研究成果報告書. 2017. 2016. 27-27
奥田修二郎, 渡辺由, 守屋勇樹, 河野信, 山本格, 松本雅記, 高見知代, 小林大樹, 荒木令江, 吉沢明康, et al. jPOST:プロテオーム統合データベースプロジェクト. 日本生化学会大会(Web). 2017. 90th. ROMBUNNO.3P-0171 (WEB ONLY)-0171]
吉沢明康, 田畑剛, 守屋勇樹, 河野信, 奥田修二郎, 渡辺由, 山本格, 松本雅記, 高見知代, 小林大樹, et al. jPOST:同定結果のFDR改善を目指す再解析プロトコルの開発. 日本生化学会大会(Web). 2017. 90th. ROMBUNNO.3P-0172 (WEB ONLY)-0172]

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Patents (13)：

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Books (4)：

Encyclopedia of genetics : origin of inheritance and diversity
Maruzen Publishing 2022 ISBN:9784621306604
よくわかるバイオインフォマティクス入門 (KS生命科学専門書)
講談社 2018 ISBN:4065138213
老年医学 update 2009-10
メジカルビュー 2009 ISBN:9784758304801
ゲノミクス・プロテオミクスの新展開 : 生物情報の解析と応用
エヌ・ティー・エス 2004 ISBN:4860430492

Lectures and oral presentations (207)：

jPOST & JPDM: a database for proteomics and a journal for data articles
(The 46th Annual Meeting of the Molecular Biology Society of Japan 2023)
Current Development Status of MB-POST, a Metabolome Data Repository
(2023)
Mass++ ver.4 - An open-source MS data viewer with enhanced basic functions and easy implementation of external software
(ASMS 2023 (70th ASMS (American Society for Mass Spectrometry) Conference on Mass Spectrometry and Allied Topics) 2023)
Temporal Analysis of Proteome and Phosphoproteomeof the SARS-CoV-2 Infected Cell
(6th International Symposium of Kyoto Biomolecular Mass Spectrometry Society/International Symposium on Mass Spectrometry Imaging 2023 Kyoto 2023)
Mass++ ver.4 -MS data viewer meets online databases-
(Human Proteome Organization World Congress (HUPO2022) 2022)

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Works (7)：

Mass++ ver.4
Tanaka, S, Murase, M, Kato, M, Yamamoto, H, Tabata, T, Kusano, M, Kawano, S, Goto, S, Ishihama, Y, Yoshizawa, AC 2018 - 現在
jPOST
Moriya, Y, Kawano, S, Okuda, S, Watanabe, Y, Matsumoto, M, Takami, T, Kobayashi, D, Yamanouchi, Y, Araki, N, Yoshizawa, AC, Tabata, T, Iwasaki, M, Sugiyama, N, Tanaka, S, Goto, S, Ishihama, Y 2016 - 現在
Mass++ ver.2.7.4/2.7.5
Tanaka, S, Fujita,Y, Parry, H.E, Yoshizawa, AC, Morimoto, K, Murase, M, Yamada, Y, Yao, J, Utsunomiya, S, Kajihara, S, Fukuda, M, Ikawa, M, Tabata, T, Takahashi, K, Aoshima, K, Nihei, Y, Nishioka, T, Oda, Y, Tanaka, K 2014 - 現在
ProteinCarta
Yoshizawa, AC, Fukuyama, Y, Kajihara, S, Kuyama, H, Tanaka, K 2014 - 現在
KEGG OC
Nakaya, A, Katayama, T, Itoh, M, Hiranuka, K, Kawashima, S, Moriya, Y, Okuda, S, Tanaka, M, Tokimatsu, T, Yamanishi, Y, Yoshizawa, AC, Kanehisa, M, Goto, S 2012 - 現在

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Education (4)：

1999 - 2002 Kyoto University Graduate School of Science (Ph.D. course) Department of Biological Science
1989 - 1995 Kyoto University Graduate School of Science (Ph.D. course) Department of Biophysics
1987 - 1989 Kyoto University Graduate School of Science (Master course) Department of Biophysics
1983 - 1987 Kyoto University Faculty of Science

Professional career (1)：

Work history (14)：

2023/05 - 現在 Niigata University Medical AI Center, Graduate School of Medical and Dental Sciences Project Associate Professor
2022/04 - 2023/03 Toyama University of International Studies Faculty of Contemporary Society Project Researcher
2018/04 - 2022/03 Kyoto University Graduate School of Pharmaceutical Sciences Project Assistant Professor
2018/04 - 2020/03 Okayama University Graduate School of Medicine , Dentistry and Pharmaceutical Sciences Lecturer (part-time)
2017/04 - 2018/03 Kyoto University Graduate School of Pharmaceutical Sciences Program-Specific Researcher

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Association Membership(s) (5)：

Human Proteome Organization (HUPO) , American Society for Mass Spectrometry (ASMS) , 日本生物物理学会 , 日本分子生物学会 , 日本プロテオーム学会

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