Rchr
J-GLOBAL ID：200901093669615031   Update date: Nov. 21, 2024

YOSHIZAWA Akiyasu C.

ヨシザワ アキヤス | YOSHIZAWA Akiyasu C.
Affiliation and department：
Niigata University Graduate School of Medical and Dental Sciences (Medical AI Center, Medical School)

About Niigata University Graduate School of Medical and Dental Sciences (Medical AI Center, Medical School)


Job title： Project Associate Professor
Research field  (3)： Biological, health, and medical informatics ,  Systems genomics ,  Biophysics
Research keywords  (7)： bioinformatics (computational biology) ,  database ,  proteomics ,  comparative genomics ,  mass spectrometry ,  metabolomics ,  biomembrane
Research theme for competitive and other funds  (18)：
  • 2024 - 2027 Construction of Advanced Information Science Basis for Precise Metaproteome Analysis
  • 2024 - 2025 Construction of an enrichment analysis platform to facilitate the interpretation of omics data based on mass spectrometry
  • 2024 - 2025 Development of an automated and quick genome annotation tool for omics analysis, and phylogenetic information display tool
  • 2023 - 2024 Development of an automated and quick genome annotation tool for omics analysis
  • 2022 - 2023 Development of a web tool for sequence information acquisition and the novel amino acid sequence identification resource against whole genome sequence data using high-speed character string search
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Papers (34)：
  • Okuda S†, Yoshizawa AC†, Kobayashi D, Takahashi Y, Watanabe Y, Moriya Y, Hatano A, Takami T, Matsumoto M, Araki N, et al. jPOST environment accelerates the reuse and reanalysis of public proteome mass spectrometry data. Nucleic Acids Research. 2024
  • Liu Y, Yoshizawa AC, Ling Y, Okuda S. Insights into predicting small molecule retention times in liquid chromatography using deep learning. Journal of Cheminformatics. 2024. 16. 113
  • Watanabe Y, Yoshizawa AC, Ishihama Y, Okuda S. The jPOST Repository as a Public Data Repository for Shotgun Proteomics. Methods in Molecular Biology. 2021. 2259. 309-322
  • Oka M, Xu L, Suzuki T, Yoshikawa T, Sakamoto H, Uemura H, Yoshizawa AC, Suzuki Y, Nakatsura T, Ishihama Y, et al. Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer. Genome Biology. 2021. 22. 9
  • Yamamoto H, Hayakawa E, Tsugawa H, Moriya Y, Fukusaki E, Goto S, Hasunuma T, Miura N, Yoshizawa AC. Japan Computational Mass Spectrometry Meeting 2020 Activity Report. Journal of Proteome Data and Methods. 2020. 2. 5
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MISC (41)：
  • Tabata T, Yoshizawa AC, Ogata K, Chang C, Araki N, Sugiyama N, Ishihama Y. UniScore, a unified and universal measure for peptide identification by multiple search engines. BioRxiv. 2024. 2024.10.09.617445
  • 高橋悠志, 吉沢明康, 小林大樹, 守屋勇樹, 幡野敦, 高見知代, 松本雅記, 荒木令江, 田畑剛, 田畑剛, et al. Accelerating data re-analysis in jPOST using metadata from JPDM data papers. 日本プロテオーム学会大会プログラム・抄録集. 2024. 2024 (Web)
  • 守屋 勇樹, 吉沢 明康. 第3回質量分析インフォマティクス・ハッカソン(質量分析インフォマティクス研究会)〔地域部会・公募研究会の活動報告〕. 日本バイオインフォマティクス学会ニュースレター. 2020. 37. 18-19
  • 守屋 勇樹, 吉沢 明康. 質量分析インフォマティクス研究会〔地域部会・公募研究会の活動報告〕. 日本バイオインフォマティクス学会ニュースレター. 2019. 36. 13-14
  • 吉沢 明康, 田畑 剛, 岩崎 未央, 杉山 直幸, Kaell Lukas, 石濱 泰. 事後ペプチドシーケンスタグの利用によるタンパク質同定の精度向上. 電気泳動. 2019. 63. Suppl. 245-245
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Patents (13)：
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Books (4)：
  • Encyclopedia of genetics : origin of inheritance and diversity
    Maruzen Publishing 2022 ISBN:9784621306604
  • An Intelligible Introdution to Bioinformatics
    Kodansha 2018 ISBN:4065138213
  • 老年医学 update 2009-10
    メジカルビュー 2009 ISBN:9784758304801
  • ゲノミクス・プロテオミクスの新展開 : 生物情報の解析と応用
    エヌ・ティー・エス 2004 ISBN:4860430492
Lectures and oral presentations  (222)：
  • Prediction of Protein Metabolic Turnover Using Large Language Models
    (2024)
  • jPOST, an integrated database for proteomics, and JPDM, a new journal for data articles
    (2024)
  • MB-POST: A novel data repository for storing high-quality spectral data in metabolomics mass spectrometry
    (2024)
  • Mass spectrometry data repositories facilitate the multi-omics experimental data accumulation and reanalysis
    (APBJC 2024 (Asia & Pacific Bioinformatics Joint Conference 2024) 2024)
  • From JPDM to jPOST: Semi-automated data reanalysis using data articles
    (2024)
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Works (7)：
  • Mass++ ver.4
    Tanaka, S, Murase, M, Kato, M, Yamamoto, H, Matsubara, M, Tabata, T, Kusano, M, Kawano, S, Okuda, S, Yoshizawa, AC 2018 - 現在
  • jPOST (repoitory (jPOSTrepo), database (jPOSTdb), reanalysis)
    Okuda, S, Yoshizawa,AC, Kobayashi,D, Takahashi,Y, Watanabe,Y, Moriya,Y, Hatano,A, Takami,T, Matsumoto,M, Araki,N, Tabata,T, Iwasaki,M, Sugiyama,N, Kodera,Y, Tanaka,S, Goto,S, Kawano,S, Ishihama,Y 2016 - 現在
  • Mass++ ver.2.7.4/2.7.5
    Tanaka, S, Fujita,Y, Parry, H.E, Yoshizawa, AC, Morimoto, K, Murase, M, Yamada, Y, Yao, J, Utsunomiya, S, Kajihara, S, Fukuda, M, Ikawa, M, Tabata, T, Takahashi, K, Aoshima, K, Nihei, Y, Nishioka, T, Oda, Y, Tanaka, K 2014 - 現在
  • KEGG OC
    Nakaya, A, Katayama, T, Itoh, M, Hiranuka, K, Kawashima, S, Moriya, Y, Okuda, S, Tanaka, M, Tokimatsu, T, Yamanishi, Y, Yoshizawa, AC, Kanehisa, M, Goto, S 2012 - 現在
  • CIPRO (Ciona intestinalis Protein Database)
    Endo, T, Ueno, K, Yonezawa, K, Mineta, K, Hotta, K, Satou, Y, Yamada, L, Ogasawara, M, Takahashi, H, Nakajima, A, Nakachi, M, Nomura, M, Yaguchi, J, Sasakura, Y, Yamasaki, C, Sera, M, Yoshizawa, AC, Imanishi, T, Taniguchi, H, Inaba, K 2009 - 現在
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Education (4)：
  • 1999 - 2002 Kyoto University Graduate School of Science (Ph.D. course) Department of Biological Science
  • 1989 - 1995 Kyoto University Graduate School of Science (Ph.D. course) Department of Biophysics
  • 1987 - 1989 Kyoto University Graduate School of Science (Master course) Department of Biophysics
  • 1983 - 1987 Kyoto University Faculty of Science
Professional career (1)：
  • Ph.D. (Doctor of Science) (Kyoto University)
Work history (15)：
  • 2023/05 - 現在 Niigata University Medical AI Center, Graduate School of Medical and Dental Sciences (Medical School) Project Associate Professor
  • 2023/10 - 2024/03 Kyoto University Graduate School of Pharmaceutical Sciences / Graduate School of Science Lecturer (part-time)
  • 2022/04 - 2023/03 Toyama University of International Studies Faculty of Contemporary Society Project Researcher
  • 2018/04 - 2022/03 Kyoto University Graduate School of Pharmaceutical Sciences Project Assistant Professor
  • 2018/04 - 2020/03 Okayama University Graduate School of Medicine , Dentistry and Pharmaceutical Sciences Lecturer (part-time)
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Association Membership(s) (6)：
The Japanese Biochemical Society ,  American Society for Mass Spectrometry (ASMS) ,  Human Proteome Organization (HUPO) ,  Japanese Proteomics Society (Japanese Society of HUPO) ,  The Molecular Biology Society of Japan ,  日本生物物理学会
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