- 2021 - 2024 A proposal for "anti-dementia dietary habits" based on healthy longevity epigenomics that links dietary habits and cognitive function
- 2022 - 2023 Preventive medicine through inflammation cellular sociology
- 2017 - 2022 Study of Information analysis and modelinig
- 2014 - 2017 Integrative study of nucleotide sequence evolution using primate genomes as model
- 2013 - 2015 Plant genetic loci controlling rhizosphere microbial community composition
- 2011 - 2014 Evolution of Eye as sensory organ
- 2005 - 2009 An informatics approach to the systematic understanding of a model disease
- 2007 - 2008 The origin of Dinoflagellate lens-eye from DNA and morphology
- 2007 - 2008 Genomic study of preretinal fibrovascular membranes associated with proliferative diabetic retinopathy
- 2005 - 2007 Genetic analysis of the function and development of pigment cells essential for visual and auditory senses
- 2004 - 2007 Collection and Investigation into Basic Evolutionary Information by Orrsite Collaboration
- 2005 - 2005 遺伝子発現比較による生物多様性の分子進化メカニズムの解明
- 2004 - 2005 Exploration of functional non-coding sequences in the higher eukaryotic genomes.
- 2002 - 2004 Genetic analysis of the function and development of the inner ear pigment cells essential for hearing acuity.
- 1998 - 2000 Study on the DNA database and other biological databases
- 1998 - 1999 Approach for the comparative study of gene expression patterns in brain development.
- 1997 - 1997 正の自然淘汰の働く遺伝子内領域の推定に基づく遺伝子機能とその変化の予測
- 1995 - 1997 Prediction of gene functions by use of molecular evolutionary approach
- 1995 - 1997 Elucidation of molecular evolutinary mechanisms of HIV and HCV
- 1995 - 1997 Study on DNA and related bioinformatics databases
- 1995 - 1996 Development of "Molecular Structural Phylogeny" on the Consideration of Protein 3D structure
- 1995 - 1995 アミノ酸配列のマルチプル・アラインメントからのモチーフの抽出と立体構造との対応
- 1994 - 1994 モザイクタンパク質の進化と機能予測
- 1993 - 1994 病原性ウイルス遺伝子の系統樹解析と機能予測
- 1992 - 1994 Study on the development of the DNA databank
- 1993 - 1993 蛋白質のドメイン構造からみたプロテアーゼ遺伝子とインヒビター遺伝子の分子進化
- ホメオボックス遺伝子の分子進化
- 遺伝子発現ネトワークの進化
- ドメイン構造からみたセリン・プロテアーゼの分子進化
- Molecular evolution of serine protease as mosaic protein
- Evolution of gene expression retrwork
- Molecular evolution of HomeoBox gene
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