Uchikoga Nobuyuki

ウチコガノブユキ | Uchikoga Nobuyuki

Affiliation and department：

Research field (1)： Biological, health, and medical informatics

Research keywords (1)：タンパク質間相互作用予測

Research theme for competitive and other funds (4)：

2016 - 2019 Tropical diseases-related protein-protein interaction analysis by using exhaustive docking
2015 - 2018 アミノ酸残基レベルの相互作用プロファイルを用いたタンパク質間相互作用予測法の開発
2006 - プロファイル法によるタンパク質間相互作用予測
2001 - 2004 アミノ酸配列からのタンパク質複合体形成の予測

Papers (22)：

Guillaume Launay, Masahito Ohue, Julia Prieto Santero, Yuri Matsuzaki, Cécile Hilpert, Nobuyuki Uchikoga, Takanori Hayashi, Juliette Martin. Evaluation of CONSRANK-Like Scoring Functions for Rescoring Ensembles of Protein-Protein Docking Poses. Frontiers in molecular biosciences. 2020. 7. 308-559005
Yuri Matsuzaki, Nobuyuki Uchikoga, Masahito Ohue, Yutaka Akiyama. Rigid-Docking Approaches to Explore Protein-Protein Interaction Space. NETWORK BIOLOGY. 2017. 160. 33-55
Uchikoga N, Matsuzaki Y, Ohue M, Akiyama Y. Specificity of broad protein interaction surfaces for proteins with multiple binding partners. Biophysics and Physicobiology. 2016. 13. 105-115
Ohue Masahito, Matsuzaki Yuri, Uchikoga Nobuyuki, Ishida Takashi, Akiyama Yutaka. 2P014 MEGADOCK: a high-performance protein-protein interaction prediction tool on supercomputing environments(01A. Protein: Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014)). Seibutsu Butsuri. 2014. 54. 1. S197
Uchikoga Nobuyuki, Matsuzaki Yuri, Ohue Masahito, Akiyama Yutaka, Hirokawa Takatsugu. 2P271 Analysis of properties of protein-protein interaction surface areas involved in more near-native complexes by Re-docking scheme(22A. Bioinformatics:Structural genomics,Poster). Seibutsu Butsuri. 2014. 54. 1. S240

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MISC (42)：

Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama. Interaction Surfaces of Proteins Involved in Bacterial Chemotaxis with Rigid-Body Docking Decoys. BIOPHYSICAL JOURNAL. 2017. 112. 3. 290A-290A
Yuri Matsuzaki, Jaak Simm, Nobuyuki Uchikoga, Yutaka Akiyama. A Docking Based Approach to Analyze Interaction Surfaces of Virus-Host Protein-Protein Interactions. BIOPHYSICAL JOURNAL. 2017. 112. 3. 451A-452A
Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama. Analysis of Physico-Chemical Properties of Protein Docking Decoys Generated by Rigid-Body Docking. BIOPHYSICAL JOURNAL. 2016. 110. 3. 327A-327A
Masahito Ohue, Yuri Matsuzaki, Nobuyuki Uchikoga, Takashi Ishida, Yutaka Akiyama. Megadock 4.0. An Ultra-High-Performance Protein-Protein Docking Software for Heterogeneous Supercomputers. BIOPHYSICAL JOURNAL. 2016. 110. 3. 327A-327A
Nobuyuki Uchikoga, Masahito Ohue, Yuri Matsuzaki, Yutaka Akiyama. Post-docking analysis by physicochemical properties of protein-protein interactions generated from rigid-body docking processes. PROTEIN SCIENCE. 2015. 24. 253-253

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Books (1)：

Lectures and oral presentations (37)：

Biophysical view of protein interaction surfaces
(低分子化合物とタンパク質の情報解析 2016)
Analysis of Physico-chemical properties of protein docking decoys generated by rigid-body docking
(Biophysical society 60th annual meeting 2016)
Re-docking by analyzing the profile of protein-protein interaction
(CBI学会2016年大会 2016)
MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers
(Biophysical society 60h annual meeting 2016)
タンパク質C末端に存在する機能未知配列に関する研究
(第15回日本蛋白質科学会年会 2015)

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Works (3)：

Education (4)：

Professional career (1)：

Work history (12)：

2021/04 - 現在 Meiji University School of Interdisciplinary Mathematical Sciences
2018/10 - 2021/03 Meiji University School of Interdisciplinary Mathematical Sciences
2012/04 - 2021 立教大学非常勤講師
2017/04 - 2018/03 Tokyo Institute of Technology
2012/04 - 2017/03 Chuo University Faculty of Science and Engineering

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Committee career (2)：

2022 - 現在 Editorial Board : Frontiers in Bioinformatics (Protein Bioinformatics) Review Editor
2003 - 日本生物物理学会第41回日本生物物理学会年会実行委員

Association Membership(s) (3)：

日本生物物理学会 , 日本バイオインフォマティクス学会 , Biophysical Society

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