Yu Toyoshima

トヨシマユウ | Yu Toyoshima

Affiliation and department：
Homepage URL (2)： https://www.bs.s.u-tokyo.ac.jp/~toyoshimalab/ , https://www.bs.s.u-tokyo.ac.jp/~toyoshimalab/en/

Research field (1)： Neuroscience - general

Research keywords (7)： Caenorhabditis elegans , Neuroscience , Bioimage informatics , Mathematical modeling , Bioimaging , Systems biology , Systems biology, Bioimaging, Mathematical modeling, Bioimage informatics, neuroscience, Caenorabditis elegans

Research theme for competitive and other funds (13)：

2022 - 2025 Comprehensive understanding of avoidance behavior caused by environmental sensing
2022 - 2024 神経回路における多重情報コードの情報物理学的解析
2019 - 2023 Whole brain activity measurement and gene expression analysis of neurons in Caenorhabditis elegans
2019 - 2021 ナビ行動を生み出す神経情報処理の自由行動4Dイメージングによる解析
2018 - 2020 自由行動中の生物の機能的全脳計測に適した高精度な細胞追跡手法

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Papers (23)：

Kazuki Ichikawa, Massa J. Shoura, Karen L. Artiles, Dae-Eun Jeong, Chie Owa, Haruka Kobayashi, Yoshihiko Suzuki, Manami Kanamori, Yu Toyoshima, Yuichi Iino, et al. CGC1, a new reference genome forCaenorhabditis elegans. 2024
Yu Toyoshima, Hirofumi Sato, Daiki Nagata, Manami Kanamori, Moon Sun Jang, Koyo Kuze, Suzu Oe, Takayuki Teramoto, Yuishi Iwasaki, Ryo Yoshida, et al. Ensemble dynamics and information flow deduction from whole-brain imaging data. PLOS Computational Biology. 2024
Ayaka Matsumoto, Yu Toyoshima, Chenqi Zhang, Akihiro Isozaki, Keisuke Goda, Yuichi Iino. Neuronal sensorimotor integration guiding salt concentration navigation in Caenorhabditis elegans. Proceedings of the National Academy of Sciences. 2024
Koyo Kuze, Ukyo T. Tazawa, Karin Suwazono, Yu Toyoshima, Yuichi Iino. WormTracer: A precise method for worm posture analysis using temporal continuity. 2023
Koki Tsuyuzaki, Kentaro Yamamoto, Yu Toyoshima, Hirofumi Sato, Manami Kanamori, Takayuki Teramoto, Takeshi Ishihara, Yuichi Iino, Itoshi Nikaido. WormTensor: a clustering method for time-series whole-brain activity data from C. elegans. BMC Bioinformatics. 2023. 24. 1

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MISC (18)：

豊島有, 飯野雄一, 鈴木庸平. 学部生に伝える研究最前線. 東京大学理学系研究科・理学部ニュース. 2020. 52. 2. 10-11
Iwasaki Y., Jang M. S., Yoshida R., Iino Y., Ishihara T., Sato H., Oe S., Kuge S., Teramoto T., Tokunaga T., et al. Causality analysis of the whole-brain activity data in C. elegans II. Meeting Abstracts of the Physical Society of Japan. 2018. 73. 0. 2315-2315
TOYOSHIMA Yu, IINO Yuichi. Bio-image Informatics for Measuring the Activities of Densely Distributed Neurons. Seibutsu Butsuri. 2017. 57. 1. 20-22
Iwasaki Y., Iino Y., Ishihara T., Teramoto T., Oe S., Tokunaga T., Hirose O., Wu S., Toyoshima Y., Jang M. S., et al. Phase analysis of whole-brain activity data in C. elegans. Meeting Abstracts of the Physical Society of Japan. 2017. 72. 0. 2817-2817
Shigekazu Oda, Yu Toyoshima, Mario de Bono. Modulation of sensory information processing by a neuroglobin in C. elegans. 2016

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Lectures and oral presentations (163)：

線虫の神経回路における多重情報コードの情報物理学的解析
(新学術領域「生命の情報物理学」第8回領域会議)
線虫の神経回路における多重情報コードの情報物理学的解析
(新学術領域「生命の情報物理学」第7回領域会議)
Analysis of the decreased brain-wide neural correlations in aging C. elegans
(線虫研究の未来を創る会2023 2023)
Whole brain activity measurement and gene expression analysis of neurons in Caenorhabditis elegans
(The 1st JST International Symposium “Dynamics of Cellular Interactions in Multicellular Systems” 2023)
Analyisis of multiplexed information coding in the nervous system of C. elegans
(第75回日本細胞生物学会大会 2023)

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Professional career (1)：

博士(理学) (東京大学)

Work history (4)：

2021/08 - 現在 The University of Tokyo Graduate School of Science Department of Biological Sciences
2014/04 - 2021/07 The University of Tokyo Graduate School of Science Department of Biological Sciences
2013/04 - 2014/03 The University of Tokyo Graduate School of Science Department of Biophysics and Biochemistry
2012/04 - 2013/03 The University of Tokyo Graduate School of Science Department of Biophysics and Biochemistry Researcher

Awards (2)：

2021/11 - The University of Tokyo The University of Tokyo Excellent Young Researcher
2013/12 - JST CREST「生命動態」第2回領域会議ポスター賞 (2013)

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