Mamitsuka Hiroshi | Researcher Information

2021 - 2026 Development of new fabrication methods of polymer materials based on the structurally controlled hyperbranched polymers
2022 - 2025 多様なデータからの包括的データ構造推定
2020 - 2023 Developing machine learning based bioinformatics to decipher hidden biology of depression symptoms
2019 - 2022 Efficient estimation of data structure from multiple tensors
2016 - 2020 Estimating the factor structure in multiple matrices

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Huiying Yan, Shaojun Wang, Hancheng Liu, Hiroshi Mamitsuka, Shanfeng Zhu. GORetriever: reranking protein-description-based GO candidates by literature-driven deep information retrieval for protein function annotation. Bioinformatics. 2024. 40. Supplement_2. ii53-ii61
Tianxiao Cao, Lu Sun, Canh Hao Nguyen, Hiroshi Mamitsuka. Learning Low-Rank Tensor Cores with Probabilistic l0-Regularized Rank Selection for Model Compression. Proceedings of the Thirty-ThirdInternational Joint Conference on Artificial Intelligence (IJCAI 2024). 2024. 3780-3788
Duc Anh Nguyen, Canh Hao Nguyen, Hiroshi Mamitsuka. Central-Smoothing Hypergraph Neural Networks for Predicting Drug-Drug Interactions. IEEE Transactions on Neural Networks and Learning Systems. 2024. 35. 8. 11620-11625
Chiaki Yoshikawa, Duc Anh Nguyen, Tadashi Nakaji-Hirabayashi, Ichigaku Takigawa, Hiroshi Mamitsuka. Graph Network-Based Simulation of Multicellular Dynamics Driven by Concentrated Polymer Brush-Modified Cellulose Nanofibers. ACS Biomaterials Science & Engineering. 2024. 10. 4. 2165-2176
Kei-ichiro Takahashi, Hiroshi Mamitsuka, Masatoshi Tosaka, Nanyi Zhu, Shigeru Yamago. CoPolDB: a copolymerization database for radical polymerization. Polymer Chemistry. 2024. 15. 10. 965-971

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大内史子, 小山傑, 小山傑, 進藤真由美, 馬見塚拓, 瀧川一学, 尾嶋孝一, 秦勝志, 小野弥子, 反町洋之. カルパインの特性を規定する基質特異性の定量的構造-活性相関解析. 日本農芸化学会大会講演要旨集(Web). 2017. 2017
大内史子, 小山傑, 小山傑, 小野弥子, 秦勝志, 尾嶋孝一, 尾嶋孝一, 進藤真由美, DE VERLE David, DE VERLE David, et al. カルパインの基質切断部位の予測. 日本病態プロテアーゼ学会学術集会プログラム抄録集. 2016. 21st
Clustering Features based on Simultaneous Manifold Learning. 2015. 115. 323. 195-201
KARASUYAMA Masayuki, MAMITSUKA Hirhoshi. Similarity Adaptation for Label Propagation based on Local Linear Reconstruction. 2013. 112. 452. 115-121
KARASUYAMA Masayuki, MAMITSUKA Hiroshi. Propagating Labels via Sparse Combination of Multiple Graphs. 2012. 112. 279. 171-178

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Method and system for selecting a plant variety
Knowledge finding method
複数文字列アライメント方法およびシステム
隠れマルコフモデル学習システム及び学習方法
タンパク質立体構造予測方法

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Machine Learning for Marketing
Global Data Science Publishing 2019 ISBN:9784991044526
Textbook of Machine Learning and Data Mining (with Bioinformatics Applications)
Global Data Science Publishing 2018 ISBN:9784991044502
Methods in Molecular Biology, Volume 1807: Data Mining for Systems Biology: Methods and Protocols, 2nd Edition
Humana Press (Springer) 2018 ISBN:9781493985609
Methods in Molecular Biology, Volume 993: In Silico Models for Drug Discovery
Humana Press (Springer) 2013 ISBN:9781627033411
Methods in Molecular Biology, Volume 939: Data Mining for Systems Biology: Methods and Protocols
Humana Press (Springer) 2012 ISBN:9781627031066

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Hypergraph for predicting adverse drug reaction
(Seminar 2024)
Omics-data machine learning for precise drug response prediction
(Seminar 2024)
Omics-data machine learning for precise drug response prediction
(Seminar 2024)
Omics-data machine learning for precise drug response prediction
(Seminar 2024)
Omics-data machine learning for precise drug response prediction
(Computer Science Colloquium 2024)

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2005/04 - 現在 Kyoto University Bioinformatics Center, Institute for Chemical Research Professor
2002/04 - 2005/03 Kyoto University SGI Donation Laboratory, Institute for Chemical Research Visiting Associate Professor
1991/04 - 2002/03 NEC Corporation Research Staff Member

2013/02 - 現在 Computational Intelligence Society, IEEE Bioinformatics and Bioengineering Technical Committee Member
2024/10 - 2024/10 33rd ACM International Conference on Information and Knowledge Management (CIKM 2024) Senior Program Committee Member
2023/10 - 2023/10 32nd ACM International Conference on Information and Knowledge Management (CIKM 2023) Senior Program Committee Member
2023/09 - 2023/09 European Conference on Machine Learning and Knowledge Discovery in Databases (ECML PKDD 2023) Program Committee Member
2023/08 - 2023/08 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2023) Program Committee Member

2023/07 - 2023/07 Fortieth International Conference on Machine Learning (ICML 2023) Program Committee Member

2022/10 - 2022/10 31st ACM International Conference on Information and Knowledge Management (CIKM 2022) Senior Program Committee Member

2022/08 - 2022/08 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2022) Program Committee Member

2022/04 - 2022/04 Tenth International Conference on Learning Representations (ICLR 2022) Program Committee Member

2022/02 - 2022/03 Thirty-Sixth AAAI Conference on Artificial Intelligence (AAAI 2022) Program Committee Member

2021/11 - 2021/11 30th ACM International Conference on Information and Knowledge Management (CIKM 2021) Program Committee Member

2021/08 - 2021/08 27th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2021) Program Committee Member

2021/05 - 2021/05 Ninth International Conference on Learning Representations (ICLR 2021) Program Committee Member

2021/02 - 2021/02 Thirty-Fifth AAAI Conference on Artificial Intelligence (AAAI 2021) Program Committee Member

2021/01 - 2021/01 29th International Joint Conference on Artificial Intelligence (IJCAI 2020) Program Committee Member

2020/12 - 2020/12 2020 IEEE International Conference on Big Data (IEEE Big Data 2020) Program Committee Member

2020/11 - 2020/11 20th IEEE International Conference on Data Mining (ICDM 2020) Program Committee Member

2020/10 - 2020/10 29th ACM International Conference on Information and Knowledge Management (CIKM 2020) Program Committee Member

2020/08 - 2020/08 26th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2020) Program Committee Member

2020/02 - 2020/02 34th AAAI Conference on Artificial Intelligence (AAAI 2020) Program Committee Member

2020/02 - 2020/02 18th Asia Pacific Bioinformatics Conference (APBC 2020) Program Committee Member

2019/12 - 2019/12 2019 IEEE International Conference on Big Data (IEEE Big Data 2019) Program Committee Member

2019/11 - 2019/11 28th ACM International Conference on Information and Knowledge Management (CIKM 2019) Program Committee Member

2019/11 - 2019/11 19th IEEE International Conference on Data Mining (ICDM 2019) Program Committee Member

2019/09 - 2019/09 18th International Conference on Bioinformatics (InCoB 2019) Program Committee Member

2019/08 - 2019/08 25th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2019) Program Committee Member

2019/06 - 2019/06 Thirty-sixth International Conference on Machine Learning (ICML 2019) Program Committee Member

2019/01 - 2019/01 17th Asia Pacific Bioinformatics Conference (APBC 2019) Program Committee Member

2018/12 - 2018/12 2018 IEEE International Conference on Big Data (IEEE Big Data 2018) Senior Program Committee Member

2018/11 - 2018/11 18th IEEE International Conference on Data Mining (ICDM 2018) Program Committee Member

2018/11 - 2018/11 30th International Conference on Tools with Artificial Intelligence (ICTAI 2018) Program Committee Member

2018/10 - 2018/10 27th ACM Conference on Information and Knowledge Management (CIKM 2018) Program Committee Member

2018/10 - 2018/10 18th International Conference on Bioinformatics and Bioengineering (BIBE 2018) Program Committee Member

2018/09 - 2018/09 17th International Conference on Bioinformatics (InCoB 2018) Program Committee Member

2018/08 - 2018/08 24th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2018) Program Committee Member

2018/06 - 2018/06 Thirty-fifth International Conference on Machine Learning (ICML 2018) Program Committee Member

2018/01 - 2018/01 16th Asia Pacific Bioinformatics Conference (APBC 2018) Program Committee Member

2017/11 - 2017/11 26th ACM Conference on Information and Knowledge Management (CIKM 2017) Program Committee Member

2017/11 - 2017/11 29th International Conference on Tools with Artificial Intelligence (ICTAI 2017) Program Committee Member

2017/10 - 2017/11 28th International Conference on Genome Informatics (GIW 2017) Program Committee Member

2017/10 - 2017/10 4th IEEE International Conference on Data Science and Advanced Analytics (DSAA 2017) Program Committee Member

2017/09 - 2017/09 16th International Conference on Bioinformatics (InCoB 2017) Program Committee Member

2017/08 - 2017/08 23rd ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2017) Program Committee Member

2017/07 - 2017/07 11th International Workshop on Machine Learning for Systems Biology (MLSB 2017) Program Committee Member

2017/04 - 2017/04 Track on Bioinformatics and Computational Systems Biology, 24th Symposium on Applied Computing (ACM-SAC BIO 2009) Program Committee Member

2017/01 - 2017/01 15th Asia Pacific Bioinformatics Conference (APBC 2017) Program Committee Member

2016/11 - 2016/11 28th International Conference on Tools with Artificial Intelligence (ICTAI 2016) Program Committee Member

2016/10 - 2016/11 16th International Conference on Bioinformatics and Bioengineering (BIBE 2016) Program Committee Member

2016/10 - 2016/10 27th International Conference on Genome Informatics (GIW 2016) Program Committee Co-chair

2016/09 - 2016/09 10th International Workshop on Machine Learning for Systems Biology (MLSB 2016) Program Committee Member

2016/09 - 2016/09 15th International Conference on Bioinformatics (InCoB 2016) Program Committee Member

2016/08 - 2016/08 22nd ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2016) Program Committee Member

2016/04 - 2016/04 20th Pacific Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2016) Program Committee Member

2016/01 - 2016/01 14th Asia Pacific Bioinformatics Conference (APBC 2016) Program Committee Member

2015/11 - 2015/11 Sixth Workshop on Biological Data Mining and its Applications in Healthcare, 14th IEEE International Conference on Data Mining (ICDM 2015) Program Committee Member

2015/09 - 2015/09 26th International Conference on Genome Informatics and 14th International Conference on Bioinformatics (GIW/InCoB 2015) Program Committee Member

2015/08 - 2015/08 21st ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2015) Program Committee Member

2015/05 - 2015/05 19th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2015) Program Committee Member

2014/12 - 2014/12 Fifth Workshop on Biological Data Mining and its Applications in Healthcare, 13th IEEE International Conference on Data Mining (ICDM 2014) Program Committee Member

2014/08 - 2014/08 20th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2014) Program Committee Member

2014/07 - 2014/08 13th International Conference on Bioinformatics (InCoB 2014) Program Committee Member

2014/05 - 2014/05 18th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2014) Program Committee Member

2012/04 - 2014/03 Japanese Society for Bioinformatics Board member

2013/09 - 2013/09 12th International Conference on Bioinformatics (InCoB 2013) Program Committee Member

2013/08 - 2013/08 19th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining Conference (KDD 2013) Program Committee Member

2012/10 - 2012/10 11th International Conference on Bioinformatics (InCoB 2012) Program Committee Member

2012/01 - 2012/01 10th Asia Pacific Bioinformatics Conference (APBC 2012) Program Committee Member

2011/12 - 2011/12 22nd International Conference on Genome Informatics (GIW 2011) Program Committee Member

2011/11 - 2011/12 10th International Conference on Bioinformatics (InCoB 2011) Program Committee Member

2011/11 - 2011/11 Third Asian Conference on Machine Learning (ACML 2011) Program Committee Member

2011/10 - 2011/10 20th ACM Conference on Information and Knowledge Management (CIKM 2011) Program Committee Member

2011/06 - 2011/06 21st International Conference on Artificial Neural Networks (ICANN 2011) Program Committee Member and Area Chair

2011/03 - 2011/03 Track on Bioinformatics and Computational Systems Biology, 26th Symposium on Applied Computing (ACM-SAC BIO 2011) Program Committee Member

2007/01 - 2011/03 Association of Asian Societies for Bioinformatics (AASBi) Board Member

2011/01 - 2011/01 9th Asia Pacific Bioinformatics Conference (APBC 2011) Program Committee Member

2010/11 - 2010/11 Second Asian Conference on Machine Learning (ACML 2010) Program Committee Member

2010/10 - 2010/10 19th ACM Conference on Information and Knowledge Management (CIKM 2010) Program Committee Member

2010/09 - 2010/10 8th Conference on Computational Methods in Systems Biology (CMSB 2010) Program Committee Member

2010/08 - 2010/08 International Conference on Bioinformatics and Computational Biology (ACM BCB 2010) Program Committee Member

2010/03 - 2010/03 Track on Bioinformatics and Computational Systems Biology, 25th Symposium on Applied Computing (ACM-SAC BIO 2010) Program Committee Member

2010/01 - 2010/01 8th Asia Pacific Bioinformatics Conference (APBC 2010) Program Committee Member

2009/12 - 2009/12 20th International Conference on Genome Informatics (GIW 2009) Program Committee Member

2009/11 - 2009/11 Workshop on Applications of Machine Learning in Bioinformatics, IEEE International Conference on Bioinformatics & Biomedicine (BIBM 2009) Program Committee Member

2009/11 - 2009/11 First Asian Conference on Machine Learning (ACML 2009) Program Committee Member

2009/06 - 2009/07 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2009) & 8th European Conference on Computational Biology (ECCB 2009) Program Committee Member

2009/06 - 2009/06 Ninth IEEE International Conference on Bioinformatics and Bioengineering (BIBE 2009) Program Committee Co-chair

2009/01 - 2009/01 7th Asia Pacific Bioinformatics Conference (APBC 2009) Program Committee Member

2008/12 - 2008/12 19th International Conference on Genome Informatics (GIW 2008) Program Committee Member

2008/07 - 2008/07 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2008) Program Committee Member

2007/04 - 2008/03 Japanese Society for Bioinformatics Secretary

2008/01 - 2008/01 6th Asia Pacific Bioinformatics Conference (APBC 2008) Program Committee Member

2007/12 - 2007/12 18th International Conference on Genome Informatics (GIW 2007) Program Committee Chair

2007/07 - 2007/07 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2007) & 6th European Conference on Computational Biology (ECCB 2007) Program Committee Member

2005/04 - 2007/03 Japanese Society for Bioinformatics Board member

2003/04 - 2007/03 Information Processing Society of Japan Secretary, Special Interest Group: Mathematical modeling and Problem Solving (MPS)

2006/12 - 2006/12 17th International Conference on Genome Informatics (GIW 2006) Program Committee Member

2006/10 - 2006/10 Second Biotechnology and Bioinformatics Symposium (BIOT-06) Program Committee Member

2005/10 - 2006/04 Japanese Society for Bioinformatics Member and Chair, Committee on enacting "Bioinformatics Education Curriculum"

2005/12 - 2005/12 16th International Conference on Genome Informatics (GIW 2005) Program Committee Co-chair

2005/08 - 2005/08 Second Biotechnology and Bioinformatics Symposium (BIOT-05) Program Committee Member

2004/12 - 2004/12 15th International Conference on Genome Informatics (GIW 2004) Program Committee Member

2003/12 - 2003/12 14th International Conference on Genome Informatics (GIW 2003) Program Committee Member

2002/07 - 2002/07 2nd Workshop on Data Mining in Bioinformatics (BIOKDD 2002) Program Committee Member

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2018/12 - School of Science, Aalto University SCI Awards 2018: Innovation of the Year Using Machine Learning to Tackle the Impending Food Crisis
2014/11 - Dream Challenges Best performer The Broad-DREAM Gene Essentiality Prediction Challenge, Sub-Challenge 1
2014/02 - IEEE Kansai Section IEEE Kansai Section Medal
2009 - IEEE Computer Society Service Award Program Committee Co-chair of the 9th IEEE International Conference on Bioinformatics and Bioengineering