- 2023 - 2027 Parasite flow across natural ecosystems: a theoretical and empirical synthesis and its application
- 2020 - 2023 Conservation genomics of freshwater fish: building a framework linking natural history and threat diagnosis
- 2019 - 2023 生物群集が創発する寄生者制御:宿主多様性による感染動態安定化機構の理論と実証
- 2018 - 2023 東アジアの古代湖「琵琶湖」の固有種成立過程の解明のための総合的研究
- 2017 - 2020 Origin of adaptation and population genomics in the ancient Lake Biwa
- 2015 - 2018 Comprehensive understanding of dynamics of parasite infection and communities in seasonally linked ecosystems
- 2014 - 2017 The origin, current status, and conservation of the endemic fishes of Inle Lake, an ancient lake in Myanmar
- 2014 - 2017 Adaptation of fishes in Lake Biwa, an ancient temperate lake in Japan, and its genetic basis
- 2014 - 2017 Present status of the genetic disturbances of Japanese freshwater fishes and development of conservation protocols of endemic genetic resources
- 2009 - 2011 Integrated study on the formation ofthe freshwater fish fauna in western Japan based on a large molecular data set
- 2008 - 2010 Laboratory behavioral-observations and experiments on reproductive tactics of cooperative breeding fishes
- 2007 - 2009 Origin of biodiversity of freshwater fishes in eastern Eurasia : a multi-scale approach of divergence and dispersal
- 2006 - 2008 Comparative phylogeography of Japanese freshwater fishes, and database construction of their genetic diversity
- 2005 - 2007 A study of reproductive ecology of Lake Tanganyikan cichlid fishes as the model systems of cooperative breeding in vertebrates
- 2002 - 2007 水生動物における左右性の動態と分子機構
- 2004 - 2006 A study on reproductive tactics in four species of cichlid fishes: model systems of cooperative breeding in vertebrates
- 2003 - 2005 Biodiversity and origin of freshwater fishes in the Far-Eastern Asia
- 2001 - 2002 中国南部に分布する洞窟棲淡水魚類の分子系統と適応進化
- 1998 - 1999 分子マーカーを用いたネコギギ(ナマズ目)のメタ個体群構造とその動態に関する研究
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