Yonezawa Yasushige

ヨネザワヤスシゲ | Yonezawa Yasushige

Homepage URL (1)： http://kaken.nii.ac.jp/d/r/40248753.ja.html

Research field (1)： Biophysics

Research keywords (30)：熱安定性 , 相図 , 構造情報解析 , 中性子結晶構造解析 , PDBデータベース , 酵母発現 , 中性子IP , 中性子結晶回析 , 水和水 , ヒトリゾチーム , 蛋白結晶化 , 蛋白溶解度 , 分子シミュレーション , 量子化学 , 生物物理 , 音声出力 , 酵素反応 , 分子動力学 , 生体分子 , 分子軌道法 , JAVA開発環境 , ユーザ・インタデース , リンク原子 , 文献データベース , 点字表示機能付エディタ , 局在化分子軌道 , 画面情報 , QCD , 反応自由エネルギー , 視覚障害補償機器

Research theme for competitive and other funds (20)：

2022 - 2025 イノシトールリン脂質認識機構に立脚したイオンチャネルー脂質連関の理解
2022 - 2025 新規アロステリック薬発見を目指したガン糖代謝関連タンパク質の動的分子構造解析
2021 - 2024 電気信号を化学信号に変える電位依存性ホスファターゼVSPの動作機構の解明
2017 - 2022 Prediction of rare events associated with biomolecules using mean force dynamics
2014 - 2019 Elucidation of Structure-Function Relationship of Biological Active Sites and New Material Design by Molecular Simulation

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Papers (125)：

Yuko Tsuchiya, Kei Taneishi, Yasushige Yonezawa. Autoencoder-based detection of the residues involved in G protein-coupled receptor signaling. Scientific Reports. 2021. 11. 1
Naoyuki Miyashita, Yasushige Yonezawa. Mutual information analysis of the dynamic correlation between side chains in proteins. The Journal of Chemical Physics. 2021. 155. 4. 044107-044107
Kei Moritsugu, Norifumi Yamamoto, Yasushige Yonezawa, Shin-ichi Tate, Hiroshi Fujisaki. Path Ensembles for Pin1-Catalyzed Cis-Trans Isomerization of a Substrate Calculated by Weighted Ensemble Simulations. Journal of Chemical Theory and Computation. 2021. 17. 4. 2522-2529
Tomoki Himiyama, Yuko Tsuchiya, Yasushige Yonezawa, Tsutomu Nakamura. Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification. Bioconjugate Chemistry. 2021. 32. 1. 153-160
Hiromitsu Shimoyama, Yasushige Yonezawa. Atomistic detailed free-energy landscape of intrinsically disordered protein studied by multi-scale divide-and-conquer molecular dynamics simulation. Journal of Computational Chemistry. 2021. 42. 1. 19-26

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MISC (18)：

清岡和俊, 櫻井一正, 米澤康滋, 白木琢磨. How to expand the scale and diversity of chemical library. 近畿大学先端技術総合研究所紀要. 2023. 28
白木琢磨, 櫻井一正, 米澤康滋. -Research Note-High Pressure Protein Research Center’s Efforts to Explore Allosteric Regulators. 近畿大学先端技術総合研究所紀要. 2022. 27
松倉里紗, 大西庸嵩, 古江祐也, 宮下尚之, 白木琢磨, 米澤康滋. DFHBIの有無によるリボスイッチSPINACH中のイオンの動力学への影響. 日本物理学会講演概要集(CD-ROM). 2019. 74. 2
Naoyuki Miyashita, Nobutaka Onishi, Masaya Furue, Takuma Shiraki, Yasushige Yonezawa. Dynamics of the gate of DFHBI and ions in riboswitch SPINACH. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2018. 256
Hiroshi Fujisaki, Yasushige Yonezawa, Motoyuki Shiga, Luca Maragliano, Shin-ichi Tate. Exploring Reaction Pathways for Peptidylprolyl-Isomerase. BIOPHYSICAL JOURNAL. 2017. 112. 3. 449A-449A

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Lectures and oral presentations (30)：

Study on the mechanism of GABA receptor by Molecular Dynamics Simulations
(2024)
Expression and functional analysis of cancer-related glycoprotein ENTPD5
(2024)
Difficulties;New Challenges in;Dynamic Correlation Analysis of Proteins;Protein Complexes;Using Computational;Science Simulation
(The 21st Annual meeting of the protein science society of Japan 2021)
Pin1由来のタンパク質分解酵素の触媒部位の構造ダイナミクス
(第18回日本蛋白質科学会年会 2018)
On-the-fly determination of averaged structure of proteins and the analyses using Baysian inference method
(2018)

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Professional career (1)：

工学博士 (筑波大学大学院)

Work history (3)：

2011/04 - 現在 Kindai University
2002/12 - 2011/03 Osaka University Institute for Protein Research
1992/04 - 2002/12 Tsukuba College of Technology

Awards (1)：

2014/10 - 日本学術振興会科研費審査委員表彰

Association Membership(s) (6)：

THE SOCIETY OF THEORETICAL CHEMISTRY JAPAN , JAPANESE SOCIETY FOR BIOINFORMATICS , JAPAN SOCIETY FOR MOLECULAR SCIENCE , THE BIOPHYSICAL SOCIETY OF JAPAN , PROTEIN SCIENCE SOCIETY OF JAPAN , THE MOLECULAR SIMULATION SOCIETY OF JAPAN

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