Rchr
J-GLOBAL ID：201501010274055504
Update date: Feb. 01, 2024
MASATAKE SUGITA
スギタ マサタケ | MASATAKE SUGITA
Affiliation and department：
Job title：
Specially Appointed Assistant Professor
Homepage URL (1)：
http://www.ritsumei.ac.jp/lifescience/bioinfo/kikuchi/index.html
Research field (6)：
Pharmaceuticals - chemistry and drug development
, Biophysics
, Structural biochemistry
, Bio-, chemical, and soft-matter physics
, Computational science
, Biological, health, and medical informatics
Research keywords (1)：
Biophysics, Computational Science, Bioinformatics, Solution Chemistry, Statistical Mechanical Theory
Research theme for competitive and other funds (5)：
- 2021 - 2024 Development of a fragment-based docking method based on statistical mechanics of molecular liquids
- 2018 - 2021 Development of an analytical method for calculating fluctuations based on 3D-RISM theory
- 2019 - 2020 3D-RISM理論と一般化ランジェヴァン方程式に基づく蛋白質の構造揺らぎの研究
- 2018 - 2019 3D-RISM理論と一般化ランジェヴァン方程式に基づく蛋白質の構造揺らぎの研究
- 2017 - 2018 3D-RISM理論と一般化ランジェヴァン方程式に基づく蛋白質の構造揺らぎの研究
Papers (16)：
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Jianan Li, Keisuke Yanagisawa, Masatake Sugita, Takuya Fujie, Masahito Ohue, Yutaka Akiyama. CycPeptMPDB: A Comprehensive Database of Membrane Permeability of Cyclic Peptides. Journal of chemical information and modeling. 2023. 63. 7. 2240-2250
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Masatake Sugita, Takuya Fujie, Keisuke Yanagisawa, Masahito Ohue, Yutaka Akiyama. Lipid Composition Is Critical for Accurate Membrane Permeability Prediction of Cyclic Peptides by Molecular Dynamics Simulations. Journal of chemical information and modeling. 2022. 62. 18. 4549-4560
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Masatake Sugita, Satoshi Sugiyama, Takuya Fujie, Yasushi Yoshikawa, Keisuke Yanagisawa, Masahito Ohue, Yutaka Akiyama. Large-Scale Membrane Permeability Prediction of Cyclic Peptides Crossing a Lipid Bilayer Based on Enhanced Sampling Molecular Dynamics Simulations. Journal of Chemical Information and Modeling. 2021. 61. 7. 3681-3695
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Yusei Yamada, Yoichi Ishitsuka, Yuki Kondo, Shuichi Nakahara, Asami Nishiyama, Toru Takeo, Naomi Nakagata, Keiichi Motoyama, Taishi Higashi, Hidetoshi Arima, et al. Differential mode of cholesterol inclusion with 2-hydroxypropyl-cyclodextrins increases safety margin in treatment of Niemann-Pick disease type C. British Journal of Pharmacology. 2021. 178. 13. 2727-2746
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Masatake Sugita, Izumi Kuwano, Taishi Higashi, Keiichi Motoyama, Hidetoshi Arima, Fumio Hirata. Computational Screening of a Functional Cyclodextrin Derivative for Suppressing a Side Effect of Doxorubicin. The Journal of Physical Chemistry B. 2021. 125. 9. 2308-2316
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MISC (1)：
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Masatake Sugita, Takeshi Kikuchi. Investigating Characteristics of Folding Cores from Analyses of Folding Mechaniams on Multi-Transition Proteins by Means of a Coarse-Grained Go Model. BIOPHYSICAL JOURNAL. 2014. 106. 2. 673A-673A
Patents (1)：
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予測装置、学習済みモデルの生成装置、予測方法、学習済みモデルの生成方法、予測プログラム、及び学習済みモデルの生成プログラム
Lectures and oral presentations (32)：
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3D-RISM理論に基づいたin silico創薬基盤技術の開発
(第12回BKCバイオインフォマティクス研究会 2020)
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Developing a semi analytical method for analyzing structural fluctuations of a molecule in solution phase by means of 3D-RISM theory
(The 10th TOYOTA RIKEN International Workshop on “Science of Life Phenomena Woven by Water and Biomolecules 2019)
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Exploring the ligand binding mode on a fluctuating protein
(TSRC workshop: THE ROLE OF FLUCTUATIONS AND DYNAMICS IN BIOMOLECULAR FUNCTION 2019)
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3D-RISM理論を応用した生体高分子の機能解析法の開発
(第1回松山道後・分子論セミナー 2018)
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Analysis of structural fluctuations of Met-enkephalin in the solution phase by means of 3D-RISM theory
(第56回生物物理学会年会 2018)
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Education (1)：
- - 2014 Ritsumeikan University Graduate School of Science and Engineering Science and Engineering Major
Professional career (1)：
- Ph.D (Ritsumeikan University)
Work history (5)：
- 2021/04 - 現在 Tokyo Institute of Technology School of Computing
- 2020/01 - 2021/03 Tokyo Institute of Technology School of Computing
- 2015/05 - 2019/12 Ritsumeikan University College of Llife Science Department of Bioinformatics Assistant Professor
- 2018/04 - 2018/09 University of Alberta The Department of Mechanical Engineering Invited Assistant Professor
- 2014/04/01 - 2015/03/30 Ritsumeikan University, Research Organization of Science and Technology, Senior Researcher
Association Membership(s) (4)：
溶液化学若手の会
, 溶液化学研究会
, Biophysical Society of Japan
, Protein Science Society of japan
