Rchr
J-GLOBAL ID：201501014258194419
Update date: Mar. 04, 2024
Yano Naomine
ヤノ ナオミネ | Yano Naomine
Affiliation and department：
Job title：
Tenure track researcher
Research field (2)：
Structural biochemistry
, Biophysics
Research theme for competitive and other funds (3)：
- 2022 - 2025 Development of an automatic integration range determination method for pulsed neutron diffraction data collected from protein single crystals
- 2019 - 2022 Development of peak deconvolution method for pulsed neutron diffraction data of protein long lattice crystals
- 2019 - 2021 タンパク質長格子結晶のパルス中性子回折データの強度分離法の開発
Papers (24)：
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Naomine Yano, Tatsuya Kondo, Katsuhiro Kusaka, Takatoshi Arakawa, Tatsuji Sakamoto, Shinya Fushinobu. Charge neutralization and β-elimination cleavage mechanism of family 42 L-rhamnose-α-1,4-D-glucuronate lyase revealed using neutron crystallography. Journal of Biological Chemistry. 2024. 105774-105774
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Takeshi Murakawa, Kazuo Kurihara, Mitsuo Shoji, Naomine Yano, Katsuhiro Kusaka, Yoshiaki Kawano, Mamoru Suzuki, Yasuteru Shigeta, Takato Yano, Motoyasu Adachi, et al. Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor. ACS Catalysis. 2023. 13. 18. 12403-12413
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Tatsuya Joutsuka, Ryota Nanasawa, Keisuke Igarashi, Kazuki Horie, Masakazu Sugishima, Yoshinori Hagiwara, Kei Wada, Keiichi Fukuyama, Naomine Yano, Seiji Mori, et al. Neutron crystallography and quantum chemical analysis of bilin reductase PcyA mutants reveal substrate and catalytic residue protonation states. Journal of Biological Chemistry. 2023. 299. 1. 102763-102763
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K. Shinzawa-Itoh, M. Hatanaka, K. Fujita, N. Yano, Y. Ogasawara, J. Iwata, E. Yamashita, T. Tsukihara, S. Yoshikawa and K. Muramoto. The 1.3-Å resolution structure of bovine cytochrome c oxidase suggests a dimerization mechanism. BBA Advances. 2021. 1. 100009-100009
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Kusaka, K., Yokoyama, T., Yamada, T., Yano, N., Tanaka, I., et al. Neutron diffraction experiment with the Y116S variant of transthyretin using iBIX at J-PARC: application of a new integration method. Acta crystallographica. Section D, Structural biology. 2020. 76. 1050-1056
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MISC (10)：
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SHINZAWA-ITOH Kyoko, HATANAKA Miki, FUJITA Kazuya, YANO Naomine, OGASAWARA Yumi, IWATA Jun, YAMASHITA Eiki, TSUKIHARA Tomitake, TSUKIHARA Tomitake, YOSHIKAWA Shinya, et al. The 1.3 Å resolution structure of bovine mitochondrial respiratory oxygen reductase suggests a dimerization mechanism. 生物物理(Web). 2020. 60. Supplement 1-2
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SHIMADA Atsuhiro, YANO Naomine, MURAMOTO Kazumasa, YAMASHITA Eiki, YAMASHITA Eiki, SHINZAWA-ITOH Kyoko, TSUKIHARA Tomitake, TSUKIHARA Tomitake, YOSHIKAWA Shinya. High-resolution crystal structure of cytochrome c oxidase reveals the mechanism of highly efficient proton pumping. 生物物理(Web). 2016. 56. Supplement 1-2
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TSUKIHARA Tomitake, TSUKIHARA Tomitake, SHIMADA Atsuhiro, YANO Naomine, MURAMOTO Kazumasa, SHINZAWA-ITOH Kyoko, YAMASHITA Eiki, YOSHIKAWA Shinya. Detailed crystal structural studies of bovine cytochrome oxidase to elucidate the coupling mechanism of dioxygen reduction and proton pump. 生物物理(Web). 2016. 56. Supplement 1-2
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矢野直峰, 矢野直峰, 武村修平, 島田敦広, 村本和優, 伊藤(新澤)恭子, 山下栄樹, 月原冨武, 月原冨武, 吉川信也. 高分解能X線結晶構造解析によるチトクロム酸化酵素のMgを含む水クラスターの機能. 日本結晶学会年会講演要旨集. 2014. 2014
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矢野直峰, 新澤(伊藤)恭子, 畑中美紀, 武村修平, 藤澤秀徳, 村本和優, 加藤公児, 山下栄樹, 吉川信也, 月原冨武. 精密結晶構造解析によるチトクロム酸化酵素の反応機構の研究. 日本結晶学会年会講演要旨集. 2012. 2012. 19
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Professional career (1)：
Awards (2)：
- 2016/08 - International Symposium on Diffraction Structural Biology ポスター賞 Profile fitting method to neutron time-of-flight protein single crystal diffraction data collected at iBIX in J-PARC
- 2014/09 - New Opportunities for Better User Group Software ポスター賞 Current status of TOF neutron diffraction data processing software for iBIX
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