NAKAYAMA Takuro

ナカヤマタクロウ | NAKAYAMA Takuro

Affiliation and department：
Job title： Assistant Professor
Homepage URL (1)： https://www.u.tsukuba.ac.jp/~nakayama.takuro.gb/

Research field (1)： Evolutionary biology

Research theme for competitive and other funds (8)：

2024 - 2027 二次共生の中間段階にある共生者ゲノムの解読
2020 - 2024 The overlooked diversity of the marine microbiome - Exploring the prokaryotic microbiome within eukaryotic microorganisms
2019 - 2024 光合成補助色素フコキサンチンの未知なる生合成系の解明とその誕生の謎を紐解く
2018 - 2023 海洋原生生物に共生する細菌多様性の実態解明
2017 - 2020 渦鞭毛藻細胞に見られるシアノバクテリア共生体の機能および進化の解明

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Papers (38)：

Nakayama, Takuro, Nomura, Mami, Yabuki, Akinori, Shiba, Kogiku, Inaba, Kazuo, Inagaki, Yuji. Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates. Scientific Reports. 2024. 14. 1. 12774-12774
Sakamoto, Fuku, Kanamori, Shunsuke, Díaz, Luis M, Cádiz, Antonio, Ishii, Yuu, Yamaguchi, Katsushi, Shigenobu, Shuji, Nakayama, Takuro, Makino, Takashi, Kawata, Masakado. Detection of evolutionary conserved and accelerated genomic regions related to adaptation to thermal niches in Anolis lizards. ECOLOGY AND EVOLUTION. 2024. 14. 3
Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Goro Tanifuji, Ryoma Kamikawa, Yasukazu Nakamura. A practical assembly guideline for genomes with various levels of heterozygosity. Briefings in Bioinformatics. 2023. 24. 6
Mami Nomura, Keisuke Ohta, Yukinori Nishigami, Takuro Nakayama, Kei-Ichiro Nakamura, Kenjiro Tadakuma, Josephine Galipon. Three-dimensional architecture and assembly mechanism of the egg-shaped shell in testate amoeba Paulinella micropora. Frontiers in Cell and Developmental Biology. 2023. 11
Harada, Ryo, Kume, Keitaro, Horie, Kazumasa, Nakayama, Takuro, Inagaki, Yuji, Amagasa, Toshiyuki. AtLASS: A scheme for end-to-end prediction of splice sites using attention-based bi-LSTM. IPSJ Transactions on Bioinformatics. 2023. 16. 20-27

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MISC (53)：

望月孝子, 坂本美佳, 谷澤靖洋, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一. A Practical Guide to Genome Assembly with Varied Levels of Heterozygosity. 育種学研究. 2024. 26
中山卓郎, 稲垣祐司. 緑色渦鞭毛藻Lepidodinium chlorophorumにおけるヌクレオモルフゲノムの存在検証. 藻類. 2022. 70. 1
野村真未, 西上幸範, 市川正敏, 中山卓郎, 太田啓介, 中村桂一郎. How to make a shelter in the shape of an egg, learn from testate amoeba. 日本植物生理学会年会(Web). 2021. 62nd
望月孝子, 坂本美佳, 谷澤靖洋, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一. Comprehensive evaluation of genome assembly method to construct haploid representation using organisms with various heterozygosity. 日本分子生物学会年会プログラム・要旨集(Web). 2021. 44th
望月孝子, 坂本美佳, 谷澤靖洋, 矢倉勝, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一. Supporting genome analysis of diatom: genome assembly of Nitzschia sp. PL1-4. 日本植物生理学会年会(Web). 2021. 62nd

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Books (1)：

Lectures and oral presentations (42)：

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Work history (7)：

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Awards (4)：

Association Membership(s) (1)：

THE BOTANICAL SOCIETY OF JAPAN

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