Nakayama Takuro

ナカヤマタクロウ | Nakayama Takuro

Affiliation and department：
Job title： Assistant Professor
Homepage URL (1)： https://www.u.tsukuba.ac.jp/~nakayama.takuro.gb/

Research field (1)： Evolutionary biology

Research theme for competitive and other funds (8)：

2024 - 2027 二次共生の中間段階にある共生者ゲノムの解読
2020 - 2024 The overlooked diversity of the marine microbiome - Exploring the prokaryotic microbiome within eukaryotic microorganisms
2019 - 2024 光合成補助色素フコキサンチンの未知なる生合成系の解明とその誕生の謎を紐解く
2018 - 2023 海洋原生生物に共生する細菌多様性の実態解明
2017 - 2020 渦鞭毛藻細胞に見られるシアノバクテリア共生体の機能および進化の解明

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Papers (38)：

Nakayama, Takuro, Nomura, Mami, Yabuki, Akinori, Shiba, Kogiku, Inaba, Kazuo, Inagaki, Yuji. Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates. Scientific Reports. 2024. 14. 1. 12774-12774
Sakamoto, Fuku, Kanamori, Shunsuke, Díaz, Luis M, Cádiz, Antonio, Ishii, Yuu, Yamaguchi, Katsushi, Shigenobu, Shuji, Nakayama, Takuro, Makino, Takashi, Kawata, Masakado. Detection of evolutionary conserved and accelerated genomic regions related to adaptation to thermal niches in Anolis lizards. Ecology and evolution. 2024. 14. 3
Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Goro Tanifuji, Ryoma Kamikawa, Yasukazu Nakamura. A practical assembly guideline for genomes with various levels of heterozygosity. Briefings in Bioinformatics. 2023. 24. 6
Mami Nomura, Keisuke Ohta, Yukinori Nishigami, Takuro Nakayama, Kei-Ichiro Nakamura, Kenjiro Tadakuma, Josephine Galipon. Three-dimensional architecture and assembly mechanism of the egg-shaped shell in testate amoeba Paulinella micropora. Frontiers in Cell and Developmental Biology. 2023. 11
Harada, Ryo, Kume, Keitaro, Horie, Kazumasa, Nakayama, Takuro, Inagaki, Yuji, Amagasa, Toshiyuki. AtLASS: A scheme for end-to-end prediction of splice sites using attention-based bi-LSTM. IPSJ Transactions on Bioinformatics. 2023. 16. 20-27

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MISC (52)：

中山卓郎, 稲垣祐司. 緑色渦鞭毛藻Lepidodinium chlorophorumにおけるヌクレオモルフゲノムの存在検証. 藻類. 2022. 70. 1
野村真未, 西上幸範, 市川正敏, 中山卓郎, 太田啓介, 中村桂一郎. How to make a shelter in the shape of an egg, learn from testate amoeba. 日本植物生理学会年会(Web). 2021. 62nd
望月孝子, 坂本美佳, 谷澤靖洋, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一. Comprehensive evaluation of genome assembly method to construct haploid representation using organisms with various heterozygosity. 日本分子生物学会年会プログラム・要旨集(Web). 2021. 44th
望月孝子, 坂本美佳, 谷澤靖洋, 矢倉勝, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一. Supporting genome analysis of diatom: genome assembly of Nitzschia sp. PL1-4. 日本植物生理学会年会(Web). 2021. 62nd
Ryoma Kamikawa, Azusa Itoh, Motoki Kayama, Mami Nomura, Takuro Nakayama, Hideaki Miyashita, Masanobu Kawachi. “Rappemonads” is the third lineage of Haptophyta. 7th European Phycological Congress. 2019

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Books (1)：

Lectures and oral presentations (38)：

光合成関連遺伝子に着目した緑色渦鞭毛藻TGD株のヌクレオモルフゲノムの解析.
(日本藻類学会第48回大会)
様々なヘテロ接合性レベルを持つゲノムで検証された実用的なアセンブリガイドライン
(日本育種学会第145回講演会)
様々なヘテロ接合性レベルを持つゲノムで検証された実用的なアセンブリガイドライン
(第46回日本分子生物学会年会)
Taxon sampling affects the internal relationship of Archaeplastida: Is either Rhodophyta or Glaucophyta the earliest branch in Archaeplastida?
(日本共生生物学会第7回大会)
Exploring symbiotic cyanobacteria using size-fractionated environmental DNA samples.
(日本共生生物学会第7回大会)

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Work history (7)：

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Awards (4)：

Association Membership(s) (1)：

THE BOTANICAL SOCIETY OF JAPAN

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