Ochi Haruki

Affiliation and department：
Homepage URL (1)： http://ochi.yu-med-tenure.com

Research field (3)： Molecular biology , Developmental biology , Genomics

Research keywords (8)：遺伝子発現制御 , ゲノム機能 , ゲノム進化 , 非コードDNA領域 , 発生 , 再生 , ゼブラフィッシュ , ツメガエル

Research theme for competitive and other funds (31)：

2022 - 2026 ナショナルバイオリソースプロジェクト・ツメガエル・イモリ第5期
2022 - 2025 パイオニア転写因子による再生エンハンサーのプライミング機構
2022 - 2025 スーパーエンハンサーによるオオノログ進化運命の拘束機構の研究
2023 - 2024 ネジル化修飾を介した PMLボディの凝集と腎組織再生促進の研究
2023 - 2024 令和4年度中核的拠点整備プログラム(ゲノム情報等整備・基盤技術整備)

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Papers (44)：

Aiko Kawasumi-Kita, Sang-Woo Lee, Daisuke Ohtsuka, Kaori Niimi, Yoshifumi Asakura, Keiichi Kitajima, Yuto Sakane, Koji Tamura, Haruki Ochi, Ken-ichi T. Suzuki, Yoshihiro Morishita. hoxc12/c13 as key regulators for rebooting the developmental program in Xenopus limb regeneration. Nature Communications. 2024
Development of a heat-stable alkaline phosphatase reporter system for cis-regulatory analysis and its application to three-dimensional digital imaging of Xenopus embryonic tissues. Development Growth and Differentiation. 2024
Kazuki Kitamura, Takayoshi Yamamoto, Haruki Ochi, Makoto Suzuki, Nanoka Suzuki, Takeshi Igawa, Tadashi Yoshida, Mitsuru Futakuchi, Hajime Ogino, Tatsuo Michiue. Identification of tumor-related genes via RNA sequencing of tumor tissues in Xenopus tropicalis. Scientific Reports. 2023. 13. 1
Reimi Tada, Takuya Higashidate, Takanori Amano, Shoma Ishikawa, Chifuyu Yokoyama, Suzu Kobari, Saki Nara, Koshiro Ishida, Akane Kawaguchi, Haruki Ochi, et al. The shh limb enhancer is activated in patterned limb regeneration but not in hypomorphic limb regeneration in Xenopus laevis. Developmental biology. 2023
Teruhisa Tamaki, Takafumi Yoshida, Eri Shibata, Hidenori Nishihara, Haruki Ochi, Atsushi Kawakami. Splashed E-box and AP-1 motifs cooperatively drive regeneration response and shape regeneration abilities. Biology Open. 2023. 12. 2

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MISC (15)：

Haruki Ochi, Takashi Kato, Aaron Zorn, Toshinori Hayashi, Takeshi Inoue, Mariko Kondo, Masanori Taira, Tatsuo Michiue. Versatile utilities of amphibians (part 5). Development, Growth & Differentiation. 2023. 65. 8. 459-460
Haruki Ochi. Versatile utilities of amphibians (part 4). Development, Growth & Differentiation. 2023. 65. 1. 4-5
Tatsuo Michiue, Takashi Kato, Haruki Ochi, Aaron Zorn, Toshinori Hayashi, Takeshi Inoue, Mariko Kondo, Masanori Taira. Versatile utilities of amphibians (Part 3). Development, Growth & Differentiation. 2022. 64. 9. 472-473
Tatsuo Michiue, Aaron M Zorn, Takashi Kato, Haruki Ochi, Toshinori Hayashi, Takeshi Inoue. Versatile utilities of amphibians (part 2). Development, Growth & Differentiation. 2022. 64. 7. 346-346
Tatsuo Michiue, Aaron M. Zorn, Takashi Kato, Haruki Ochi, Toshinori Hayashi, Takeshi Inoue. Versatile Utilities of Amphibians (part 1). Development, Growth & Differentiation. 2022. 64. 6. 264-265

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Lectures and oral presentations (18)：

クロマチンダイナミクスの解析から再生特異的なエンハンサーの活性化メカニズムに迫る
(日本動物学会第91回大会 2020 2020)
The regulation of kidney regeneration: mechanisms of regeneration signal-response enhancer action
(Xenopus Resources and Emerging Technologies Meeting 2019)
Arid3a regulates nephric tubule regeneration through the evolutionarily conserved regeneration signal-response enhancer.
(52th Annual Meeting of the Japanese Society of Developmental Biologists, 2019)
再生シグナル応答エンハンサー ~活性化メカニズムと進化的保存性の意味~
(動物学会関東支部大会公開シンポジウム挑戦する両生類: カエル・イモリを使った研究の最前線 2019)
二倍体と四倍体のカエルのゲノムに刻まれたシス調節配列から遺伝子発現調節の進化を読み解く
(第89回日本遺伝学会 (ワークショップ: 遺伝子重複は生物進化になにをもたらしたのか?) 2017)

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Education (1)：

2000 - 2003 Nara Institute of Science and Technology Graduate School of Biological Sciences

Professional career (1)：

バイオサイエンス (奈良先端科学技術大学院大学)

Work history (5)：

2015/04 - 現在 Yamagata University Faculty of Medicine
2013/01 - 2015/03 Yamagata University Faculty of Medicine
2012/04 - 2013/01 Nara Institute of Science and Technology
2008/01 - 2012/03 Nara Institute of Science and Technology
2003/04 - 2007/12 オレゴン大学神経科学研究所博士研究員

Awards (10)：

2023/08 - 第2回山形大学異分野交流学会優秀賞
2022/04 - 令和3年度山形大学研究推進報奨
2021/03 - 令和2年度山形大学研究推進報奨
2020/03 - 令和元年度山形大学研究推進報奨
2019/03 - 平成30年度山形大学研究推進報奨

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Association Membership(s) (6)：

THE MOLECULAR BIOLOGY SOCIETY OF JAPAN , THE ZOOLOGICAL SOCIETY OF JAPAN , JAPANESE SOCIETY OF DEVELOPMENTAL BIOLOGISTS , 日本ツメガエル研究会 , International Zebrafish Society , International Society for Regenerative Biology

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