Matsui Motomu

マツイモトム | Matsui Motomu

Affiliation and department：
Job title： Assistant Professor
Homepage URL (1)： https://sites.google.com/site/motomumatsui/

Research field (2)： Ecology and environmental science , Evolutionary biology

Research keywords (8)： phylogenetics , 微生物生態 , graph theory , Graph Splitting method , NeTaGFT , 輪作圃場 , early evolution , superfamily

Research theme for competitive and other funds (6)：

2023 - 2027 半乾燥熱帯畑作地における混作技術革新:根圏微生物機能と深層土水の活用
2022 - 2027 Development of an integrated microbiome data hub for microbiome research
2019 - 2024 Post-Koch Ecology - The next-era microbial ecology
2019 - 2024 機能インフォマティクスが解き明かすポストコッホ生態系
2015 - 2018 遺伝子配列ビッグデータを用いた「タケノコ状進化」の解明

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Papers (13)：

Susumu Morigasaki, Motomu Matsui, Iwao Ohtsu, Yuki Doi, Yusuke Kawano, Ryosuke Nakai, Wataru Iwasaki, Hisayoshi Hayashi, Naoki Takaya. Temporal and fertilizer-dependent dynamics of soil bacterial communities in buckwheat fields under long-term management. Scientific Reports. 2024. 14. 1
Hirotaka Matsumoto, Motomu Matsui. NeTaGFT: A similarity network-based method for trait analysis. Methods in Ecology and Evolution. 2023
Nanako Kanno, Shingo Kato, Moriya Ohkuma, Motomu Matsui, Wataru Iwasaki, Shinsuke Shigeto. Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithm. STAR Protocols. 2022. 3. 4. 101812-101812
Takao K. Suzuki, Motomu Matsui, Sira Sriswasdi, Wataru Iwasaki. Lifestyle Evolution Analysis by Binary-State Speciation and Extinction (BiSSE) Model. Methods in Molecular Biology. 2022. 327-342
Motomu Matsui. Frontier of Inferring Phylogenies. JSBi Bioinformatics Review. 2021. 2. 1. 30-57

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MISC (4)：

松井求, 岩崎渉. シン・近隣結合法:PANJEP法が問い直す系統解析の常識. 日本進化学会大会プログラム・講演要旨集(Web). 2022. 24th
Development and application of the novel phylogenetic method based on graph theory. 2017. 2017. 59-59
Motomu Matsui. Cover image. SGMJ news letter. 2014. 9
Motomu Matsui. Cover image. Genome Biology and Evolution. 2013. 5. 4

Lectures and oral presentations (6)：

Graph Splitting Method Resolves the Early Evolution of Protein Superfamilies
(IIBMP2018 2018)
Graph Splitting法でタンパク質スーパーファミリーの進化を俯瞰する
(第20回日本進化学会 2018)
Graph Splitting Method: Novel Phylogenetic Approach Beyond the Twilight Zone
(JSBi2015 2015)
Graph Splitting法: トワイライトゾーンを越える新たな系統解析手法
(第17回日本進化学会 2015)
バクテリアにおける転写制御ネットワークの包括的進化解析
(第8回日本ゲノム微生物学会 2014)

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Professional career (1)：

Work history (5)：

2024/08 - 現在 Kyoto University Institute for Chemical Research Assistant Professor
2017/04 - 2024/07 The University of Tokyo Graduate School of Science Research Associate
2015/04 - 2017/03 The University of Tokyo Graduate School of Science Postdoctral Fellow, Japan Society for the Promotion of Science (PD)
2014/04 - 2015/03 The University of Tokyo Graduate School of Science Postdoctral Fellow
2009/04 - 2012/03 Keio University Graduate School of Media and Governance Research Fellow, Japan Society for the Promotion of Science (DC1)

Awards (7)：

2018/09 - IIBMP2018 Excellent poster award
2017/03 - Department of Biological Sciences, Graduate School of Science, The University of Tokyo Excellent poster award
2015/10 - JSBi2015 Research encouragement award
2015/10 - JSBi2015 Best oral presentation award
2015/06 - BIO UT 2015 Excellent poster award

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Association Membership(s) (4)：

THE MOLECULAR BIOLOGY SOCIETY OF JAPAN , JAPANESE SOCIETY FOR BIOINFORMATICS , SOCIETY OF EVOLUTIONARY STUDIES, JAPAN , 日本微生物生態学会

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