2019 - 2022 Reconstruction of Past Fish Communities Using eDNA Metabarcoding in Coastal Sediment Cores
2018 - 2022 A new environmental DNA analysis to overcome inhibition: construction of a Biomass estimation equation with inhibition factors
2019 - 2021 Analysis of biological responses tol toxicity in model organisms using environmental RNA.
2017 - 2020 Reconstruction of abundance of small pelagic species using sedimentary DNA
2017 - 2020 Empirical Study on Sustainable Integrated Sediment Management for River Basin through the Restoration of Sound Sediment Transport System
2017 - 2020 Development of prediction method for mass death of fish by using eRNA and stress hormone
2015 - 2018 Stoichiometric effects of Light and nutrient balance on aquatic communities: field tests with large manipulation experiments in North America
2015 - 2018 Environmental DNA methods for muddy water to develop the noninvasive investigation on organisms in the wetlands
2015 - 2017 The effects of chemical-communication network in freshwater ecosystem on adaptation evolution of prey species and a community
2014 - 2017 Non-invasive monitoring and biomass estimation of salmonid fish using environmental DNA
2012 - 2015 Spatial hierarchy for community and ecosystem studies using the ponds on the islands
2005 - 2007 湖沼・河川生態系の食物網を介した生息場所連結
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Papers (194)：
Yuki Hatano, Shunsuke Matsuoka, Hideyuki Doi, Ryunosuke Tateno, Motohiro Hasegawa, Takashi Osono. Evaluation of the persistence of Epichloë endophyte and its possible effect on fungal assemblages in dead leaf sheaths. Fungal Biology. 2024. 128. 8. 2325-2332
Michinobu Kuwae, Yusuke Yokoyama, Stephen Tims, Michaela Froehlich, L Keith Fifield, Takahiro Aze, Narumi Tsugeki, Hideyuki Doi, Yoshiki Saito. Toward defining the Anthropocene onset using a rapid increase in anthropogenic fingerprints in global geological archives. Proceedings of the National Academy of Sciences of the United States of America. 2024. 121. 41. e2313098121
Ayano Medo, Nobuhito Ohte, Hideyuki Doi, Kiattipong Kamdee, Keisuke Koba, Nobuaki Arai, Yasushi Mitsunaga, Manabu Kume, Daichi Kojima, Takashi Nose, et al. Trophic niche partitioning and intraspecific variation in food resource use in the genus Pangasianodon in a reservoir revealed by stable isotope analysis of multiple tissues. Journal of Fish Biology. 2024
Satsuki Tsuji, Hideyuki Doi, Yusuke Hibino, Naoki Shibata, Katsutoshi Watanabe. Rapid assessment of invasion front and biological impact of the invasive fish Coreoperca herzi using quantitative eDNA metabarcoding. Biological Invasions. 2024
Yoriko Sugiyama, Shunsuke Matsuoka, Yoshito Shimono, Masayuki Ushio, Hideyuki Doi. Do aquatic fungal environmental DNA assemblages reflect the surrounding terrestrial sporocarp communities?. Fungal Ecology. 2024. 67. 101311-101311
星野辰彦, 土居秀幸, 伊藤武彦. Microbial Assembly and Adaptation in Deep Subseafloor Sediment. 日本微生物生態学会大会(Web). 2023. 36th
秦野悠貴, 松岡俊将, 土居秀幸, 長谷川元洋, 大園享司. Comparison of fungal community composition in different leaf ages of grasses. 日本生態学会大会講演要旨(Web). 2022. 69th
望月学, 土居秀幸, 松岡俊将, 瀬戸健介, 一柳英隆, 大杉泰功, 吉村千洋, 占部城太郎, 鏡味麻衣子. Community structure of aquatic fungi analyzed by comparing 50 dam lakes across Japan. 日本生態学会大会講演要旨(Web). 2022. 69th
Naiara Rodriguez-Ezpeleta, Olivier Morissette, Colin W. Bean, Shivakumara Manu, Pritam Banerjee, Anaïs Lacoursière-Roussel, Kingsly C. Beng, S. Elizabeth Alter, Fabian Roger, Luke E. Holman, et al. Trade-offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on “Environmental DNA: What's behind the term?” by Pawlowski et al., (2020). Molecular Ecology. 2021. 30. 19. 4601-4605
2022/10 - 現在 Kyoto University Graduate School of Informatics
2021/04 - 2022/09 University of Hyogo
2015/04 - 2021/03 University of Hyogo
2011/03 - 2015/04 Hiroshima University
2008/08 - 2011/02 Carl-von-Ossietzky University Oldenburg JSPS research fellow for abroad
2005/04 - 2008/07 Ehime University JSPS fellow (PD)
2006/06 - 2007/05 University of Washington Visiting scholar
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Awards (7)：
2022/03 - 村尾育英会 村尾育英会 学術賞
2018/08 - Kurita Water and Environment Foundation Research Award
2014/04 - The 16th Shinkichi Yoshimura Award, The Japanese Society of Limnology
2011/11 - Shinshu Field Science Award 2011
2009/03 - Denzaburo MIyaji Award of ESJ
2005/03 - Graduate School of Life Sciences President Prize
2005/03 - Aoba Society for the Promotion of Science Prize
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Association Membership(s) (6)：
ASLO
, ECOLOGICAL SOCIETY OF AMERICA
, The eDNA Society
, Ecology and Civil Engineering Society
, THE JAPANESE SOCIETY OF LIMNOLOGY
, THE ECOLOGICAL SOCIETY OF JAPAN
