Kawaguchi Risa K

カワグチリサ | Kawaguchi Risa K

Affiliation and department：
Homepage URL (2)： https://carushi.github.io/cb_lab/index.html , https://carushi.github.io/cb_lab/index_en.html

Research field (3)： Molecular biology , Systems genomics , Biological, health, and medical informatics

Research theme for competitive and other funds (4)：

2023 - 2027 Integrative analysis of the stochasticity of single-cell omics data for predicting pioneerness of transcription factors
2023 - 2023 Prediction of transcription factor pioneerness during the differentiation process of iPSC
2017 - 2020 Discovering inter-omics regulatory factors from multi-omics data based on structured covariance model
2014 - 2017 RNA二次構造におけるゲノムワイドな変異解析アルゴリズムの開発と進化解析への応用

Papers (19)：

Sara Ballouz, Risa Karakida Kawaguchi, Maria T. Pena, Stephan Fischer, Megan Crow, Leon French, Frank M. Knight, Linda B. Adams, Jesse Gillis. The transcriptional legacy of developmental stochasticity. Nature Communications. 2023. 14. 1
Naoki Takizawa, Risa Karakida Kawaguchi. Comprehensive in virio structure probing analysis of the influenza A virus identifies functional RNA structures involved in viral genome replication. Computational and Structural Biotechnology Journal. 2023
Risa Karakida Kawaguchi, Hisanori Kiryu. RNA Secondary Structure Alteration Caused by Single Nucleotide Variants. Methods in Molecular Biology. 2023. 2586. 107-120
Risa Karakida Kawaguchi, Hisanori Kiryu. Genome-Wide RNA Secondary Structure Prediction. Methods in Molecular Biology. 2023. 2586. 35-48
Risa Karakida Kawaguchi, Ziqi Tang, Stephan Fischer, Chandana Rajesh, Rohit Tripathy, Peter K Koo, Jesse Gillis. Learning single-cell chromatin accessibility profiles using meta-analytic marker genes. Briefings in Bioinformatics. 2022

ｍore...

MISC (3)：

高橋雅道, 河口理紗, 河口理紗, 高橋慧, 三宅基隆, 木下学, 市村幸一, 浜本隆二, 成田善孝, 瀬々潤, et al. Versatile machine-learning approaches for radiogenomics of glioma in different cohorts. 日本癌学会学術総会抄録集(Web). 2019. 78th
Kofuji Satoshi, Akiyoshi Hirayama, Naoya Sakamoto, Kazutaka Sumita, Hirofumi Yoshino, Mikako Warren, Risa Kawaguchi, Tatsuya Ozawa, Nobuyuki Onishi, Kara Wolfe, et al. GTP METABOLIC SWITCH LEADS TO NUCLEOLAR TRANSFORMATION AND MALIGNANT GROWTH OF GLIOBLASTOMA. NEURO-ONCOLOGY. 2017. 19. 35-35
高橋宏隆, 壽美田一貴, 河口理紗, 河口理紗, 小藤智史, 小藤智史, 笠原亜希子, 井上竜也, 櫻井秀敬, 和田直也, et al. GTP結合タンパク質PIP4Kβによって制御される,PI(5)Pの標的タンパク質の網羅的探索系の構築. 日本生化学会大会(Web). 2017. 90th

Books (3)：

Multi-omics: Disease research in data-driven research era
2023 ISBN:9784758104135
RNA Structure Prediction, Methods in Molecular Biology
Humana, New York. 2023 ISBN:9781071627686
実験医学増刊 Vol.35 No.10 がん代謝ワールブルグを超えて全容解明に挑む
羊土社 2017

Education (3)：

2014 - 2017 The University of Tokyo Graduate School of Frontier Sciences Department of Computational Biology and Medical Sciences
2012 - 2014 The University of Tokyo Graduate School of Frontier Sciences Department of Computational Biology
2008 - 2012 The University of Tokyo Faculty of Science Undergraduate Program for Bioinformatics and Systems Biology

Professional career (1)：

Work history (7)：

2023/04 - 現在 National Institute of Advanced Industrial Science and Technology Intelligent Bioinformatics Research Team, Artificial Intelligence Research Center (AIRC) Visiting Researcher
2022/05 - 現在 Center for iPS Cell Research and Application, Kyoto University Department of Life Science Frontiers Junior Associate Professor
2019/04 - 2022/04 Cold Spring Harbor Laboratory Postdoc Fellow
2019/04 - 2022/03 The National Institute of Advanced Industrial Science and Technology The Artificial Intelligence Research Center Collaborative researcher
2017/04 - 2020/03 National Cancer Center Research Institute Division of Molecular Modification and Cancer Biology External Research stuff

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Committee career (7)：

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Awards (6)：

2021/03 - The Uehara Memorial Foundation Postdoctoral fellowship
2018/09 - The Japanese Society for Bioinformatics (JSBi) Poster Award
2017/03 - Department of Computational Biology and Medical Science, Graduate school of Frontier Sciences, The University of Tokyo Excellent Research Awards
2017/03 - The University of Tokyo Dean's award
2016 - Department of Computational Biology and Medical Science, Graduate school of Frontier Sciences, The University of Tokyo Young Scientist Superior Oral Presentation Awards

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