Iwahashi Chigusa

イワハシチグサ | Iwahashi Chigusa

Affiliation and department：
Job title： Senior Technical Scientist
Homepage URL (1)： http://www.riken.jp/TMS2012/cbp/ja/member/profile/chigusa_kobayashi.html

Research field (2)： Biophysics , Software

Research keywords (3)： Molecular Dynamics , Computational Science , Biophysics

Research theme for competitive and other funds (2)：

2023 - 2026 Building a computational infrastructure for disclosing performance information of molecular dynamics software
2016 - 2019 生体反応とカップルする大規模構造変化のためのマルチレゾリューション法構築

Papers (33)：

Jaewoon Jung, Chigusa Kobayashi, Yuji Sugita. Acceleration of generalized replica exchange with solute tempering simulations of large biological systems on massively parallel supercomputer. Journal of Computational Chemistry. 2023
Yuxia Zhang, Chigusa Kobayashi, Xiaohan Cai, Satoshi Watanabe, Akihisa Tsutsumi, Masahide Kikkawa, Yuji Sugita, Kenji Inaba. Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle. Cell reports. 2022. 41. 10. 111760-111760
Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, Diego Ugarte La Torre, Shoji Takada, Yuji Sugita. Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations. PLOS Computational Biology. 2022. 18. 4. e1009578-e1009578
Hisham M. Dokainish, Suyong Re, Takaharu Mori, Chigusa Kobayashi, Jaewoon Jung, Yuji Sugita. The inherent flexibility of receptor binding domains in SARS-CoV-2 spike protein. ELIFE. 2022. 11
Chigusa Kobayashi, Yasuhiro Matsunaga, Jaewoon Jung, Yuji Sugita. Structural and energetic analysis of metastable intermediate states in the E1P-E2P transition of Ca2+-ATPase. Proceedings of the National Academy of Sciences. 2021. 118. 40. e2105507118-e2105507118

ｍore...

MISC (3)：

Chigusa KOBAYASHI, Yasuhiro MATSUNAGA, Jaewoon JUNG, Yuji SUGITA. Analyses of Structure Changes and Free Energy of Sarco/Endoplasmic Reticulum Ca<sup>2+</sup>-ATPase. Seibutsu Butsuri. 2022. 62. 5. 298-300
小林千草. 分子動力学法ソフトウェアGENESIS の紹介. 分子シミュレーション学会誌 “アンサンブル”. 2022. 24. 1. 51-59
Chigusa Iwahashi. Molecular dynamics simulation for protein systems using GENESIS. 2018. 11. e091

Works (1)：

GENESIS
Y. Sugita, J. Jung, T. Mori, C. Kobabayashi, Y. Matsunaga, T. Yoda, M. Feig 2014 -

Education (3)：

1998 - 2000 Nagoya University Graduate School of Science (Doctor course)
1996 - 1998 Nagoya University Graduate School of Science (Master course)
1992 - 1996 Nagoya University Faculty of Science Department of Chemistry

Professional career (1)：

博士(理学) (名古屋大学)

Work history (8)：

2024/04 - 現在 RIKEN
2020/10 - 2024/03 RIKEN Center for Computational Science Technical Scientist
2018/04 - 2020/09 RIKEN Center for Computational Science Research Scientist
2013/04 - 2018/03 RIKEN Advanced Institute for Computer Science Reseach Scientist
2011/04 - 2013/03 RIKEN Contract Reseacher

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Committee career (2)：

2021/04 - 2024/03 分子シミュレーション学会幹事会
2019/01 - 2020/12 日本生物物理学会「生物物理」会誌編集委員

Association Membership(s) (6)：

Biosupercomputing Research Community , JAPAN SOCIETY FOR MOLECULAR SCIENCE , PROTEIN SCIENCE SOCIETY OF JAPAN , THE CHEMICAL SOCIETY OF JAPAN , THE BIOPHYSICAL SOCIETY OF JAPAN , 分子シミュレーション学会

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