Rchr
J-GLOBAL ID：201801008597514351   Update date: Jul. 17, 2024

Hisashi Ishida

Hisashi Ishida
Research theme for competitive and other funds  (7)：
  • 2018 - 2021 分子動力学シミュレーションによるヌクレオソームの構造変化メカニズム解析
  • 2010 - 2012 Analysis of conformational changes in ribosome during protein synthesis reaction cycle
  • 2010 - 2011 天然変性タンパク質としてのMutSの損傷DNA修復誘導メカニズム解析
  • 2007 - 2008 分子シミュレーションによる、DNA組換えをおこすモーター蛋白質の分子機構解明
  • 2004 - 2006 Function annotation of DNA repair related proteins using molecular evolution information and computer simulation of protein dynamics
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Papers (4)：
  • Hisashi Ishida, Hidetoshi Kono. Torsional stress can regulate the unwrapping of two outer half superhelical turns of nucleosomal DNA. Proceedings of the National Academy of Sciences of the United States of America. 2021. 118. 7
  • Kono Hidetoshi, Sakuraba Shun, Ishida Hisashi. 1P123 Free Energy Profile of Nucleosomal DNA Unwrapping(05B. Nucleic acid : Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014)). Seibutsu Butsuri. 2014. 54. 1. S161
  • Kono Hidetoshi, Yonetani Yoshiteru, Ikebe Jinzen, Sakuraba Shun, Ishida Hisashi. 2SCP-01 Free Energy Profile for Nucleosomal DNA unwrapping(2SCP Functional dynamics of Nucleosome and Chromathin in Nuclear Crowding Environment,Symposium,The 51th Annual Meeting of the Biophysical Society of Japan). Seibutsu Butsuri. 2013. 53. 1. S98
  • Atsushi Matsumoto, Hisashi Ishida. Global Conformational Changes of Ribosome Observed by Normal Mode Fitting for 3D Cryo-EM Structures. STRUCTURE. 2009. 17. 12. 1605-1613
MISC (6)：
  • Hidetoshi Kono, Hisashi Ishida. Nucleosome unwrapping and unstacking. Current Opinion in Structural Biology. 2020. 64. 119-125
  • Hisashi Ishida, Hidetoshi Kono. The Free-Energy Landscape of the di-Nucleosome: A Critical Role of the H4 Tails for the Nucleosome-Nucleosome Conformation. BIOPHYSICAL JOURNAL. 2017. 112. 3. 216A-216A
  • Hisashi Ishida, Atsushi Matsumoto. Cover Image, Volume 84, Issue 8. Proteins: Structure, Function and Bioinformatics. 2016. 84. 9. C4
  • Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida. Free Energy Profiles for Nucleosomal DNA Unwrapping. BIOPHYSICAL JOURNAL. 2015. 108. 2. 73A-73A
  • Hisashi Ishida, Atsushi Matsumoto. Free-Energy Landscape of Ribosome Translocation Analysed using MD Simulations and Cryo-EM Density Maps. BIOPHYSICAL JOURNAL. 2013. 104. 2. 259A-259A
ｍore...
Lectures and oral presentations  (2)：
  • Free energy profiles of the intra- and inter-nucleosomal interactions by all-atom molecular dynamics simulations
    (2018)
  • Analysis of tRNA translocation through the ribosome by a hybrid-simulation using an MD simulation and electron microscopy density maps
    (2015)
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