Kentaro Tomii

トミイケンタロウ | Kentaro Tomii

Research field (1)： Biological, health, and medical informatics

Research theme for competitive and other funds (7)：

2021 - 2024 Structural analysis of cFLIP as an iron-binding protein and elucidation of a new physiological function
2016 - 2021 Extension of MAFFT multiple sequence alignment program mainly for large data
2016 - 2018 Functional analysis of the role of plant tyrosine protien kinase for gibberellin signalling.
2011 - 2015 Development of ultra-fast comparison method of protein local structures towards the prediction of ligand-binding sites
2011 - 2014 Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA

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Papers (76)：

Christine Guzman, Kurato Mohri, Ryotaro Nakamura, Minato Miyake, Yuko Tsuchiya, Kentaro Tomii, Hiroshi Watanabe. Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis. Nature Communications. 2024. 15. 1
Yuko Tsuchiya, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii. PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins. Journal of Chemical Information and Modeling. 2023. 63. 23. 7578-7587
Hironori Takeda, Jon V. Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, et al. A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature Structural & Molecular Biology. 2023. 30. 2. 176-187
Yuko Tsuchiya, Yu Yamamori, Kentaro Tomii. Protein-protein interaction prediction methods: from docking-based to AI-based approaches. Biophysical reviews. 2022. 14. 6. 1341-1348
Yu Yamamori, Kentaro Tomii. Application of Homology Modeling by Enhanced Profile–Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination. International Journal of Molecular Sciences. 2022. 23. 4

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