Okazaki Yusuke

オカザキユウスケ | Okazaki Yusuke

Affiliation and department：
Homepage URL (1)： https://yusukeokazaki.weebly.com/

Research field (4)： Genomics , Evolutionary biology , Ecology and environmental science , Marine/Aquatic life sciences

Research keywords (6)：ウイルス , 細菌 , メタゲノム , 琵琶湖 , 陸水学 , 微生物生態学

Research theme for competitive and other funds (16)：

2023 - 2030 Developing a high-resolution eco-genomics platform through inter-lake comparisons
2024 - 2027 Exploring the potential of bacteria-derived submicron particles to drive biological pumps
2022 - 2027 Molecular ecological mechanism of bloom disintegration by viral infection
2022 - 2026 Unveiling the organic matter dynamics functioning in lake hypolimnion
2022 - 2026 Ecology of giant viruses inhabiting the aphotic zone of the sea

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Papers (27)：

Qingwei Yang, Yanhui Yang, Jun Xia, Hideki Fukuda, Yusuke Okazaki, Toshi Nagata, Hiroyuki Ogata, Hisashi Endo. Taxon-specific contributions of microeukaryotes to biological carbon pump in the Oyashio region. ISME Communications. 2024
Liwen Zhang, Lingjie Meng, Yue Fang, Hiroyuki Ogata, Yusuke Okazaki. Spatiotemporal dynamics of giant viruses within a deep freshwater lake reveal a distinct dark-water community. The ISME Journal. 2024
Junyi Wu, Lingjie Meng, Morgan Gaïa, Hiroyuki Hikida, Yusuke Okazaki, Hisashi Endo, Hiroyuki Ogata. Gene transfer among viruses substantially contributes to gene gain of giant viruses. Molecular biology and evolution. 2024
Yusuke Okazaki, Yohei Nishikawa, Ryota Wagatsuma, Haruko Takeyama, Shin-ichi Nakano. Contrasting defense strategies of oligotrophs and copiotrophs revealed by single-cell-resolved virus-host pairing of freshwater bacteria. 2024
Yosuke Nishimura, Kohei Yamada, Yusuke Okazaki, Hiroyuki Ogata. DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics. Microbes and Environments. 2024. 39. 1. ME23061

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MISC (11)：

岡崎友輔. 大水深淡水湖のユニークな微生物生態系. 海洋化学研究. 2022. 35. 1. 39-42
疋田弘之, 岡崎友輔, 緒方博之. Genomic analysis of a giant virus using only nanopore sequencing data. 日本分子生物学会年会プログラム・要旨集(Web). 2021. 44th
岡﨑友輔. 湖沼の微生物生態系が教えてくれること. 日本微生物生態学会誌. 2021. 36. 2. 80-82
岡崎友輔. 一杯の湖水に秘められた難題. 生物工学会誌. 2020. 98. 11. 619
岡崎友輔. ネオウイルス学に出会うまで. ネオウイルス学ニュースレター. 2019. 6. 3-5

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Lectures and oral presentations (15)：

Low Infection Rate and Heterogeneous Virus-Host Interaction Among Freshwater Bacteria Revealed at the Single-Cell Resolution
(Viruses of Microbes meeting 2024 2024)
High-resolution microbial eco-genomics in deep freshwater lakes
(13th Asian Symposium on Microbial Ecology 2023)
大水深淡水湖を対象とした微生物網羅的環境ゲノムデータベースの構築
(日本陸水学会第87回大会 2023)
Single-cell genomics uncovers microbial genomic microdiversity and virus-host interactions that had eluded high-resolution metagenomics
(The Local Pangenome workshop 2023)
Single cell genomics uncovered uncultured virus-host links in a deep freshwater lake
(Symposium of Aquatic Microbial Ecology (SAME17) 2023)

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Education (3)：

Professional career (1)：

Work history (5)：

Committee career (2)：

2022/02 - 2025/12 Japanese society of limnology Planning committee
2023/01 - 2024/12 Japanese society of limnology Working group for future planning

Awards (2)：

Association Membership(s) (5)：

Japanese society for bioinformatics , アメリカ微生物学会(ASM) , 国際微生物生態学会(ISME) , 日本陸水学会 , 日本微生物生態学会

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