Kasahara Masahiro

カサハラマサヒロ | Kasahara Masahiro

Affiliation and department：

Research field (1)： Genomics

Research keywords (5)： Genome Assembly , High-performance Science , Genome Informatics , Algorithm , Genome

Research theme for competitive and other funds (11)：

2022 - 2028 Platform for Advanced Genome Science
2020 - 2023 Genome informatics using non-volatile memory
2020 - 2023 Method for sequencing and analyzing huge plant genomes
2016 - 2021 先進ゲノム解析研究推進プラットフォーム
2016 - 2019 A system for accelerating large-scale genome analysis

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Papers (31)：

Takeshi Fujino, Katsushi Yamaguchi, Toshiyuki T. Yokoyama, Toshiya Hamanaka, Yoritaka Harazono, Hiroaki Kamada, Wataru Kobayashi, Tokuko Ujino-Ihara, Kentaro Uchiyama, Asako Matsumoto, et al. A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don. BMC Genomics. 2024. 25. 1
Junji Konuma, Tomochika Fujisawa, Tomoaki Nishiyama, Masahiro Kasahara, Tomoko F Shibata, Masafumi Nozawa, Shuji Shigenobu, Atsushi Toyoda, Mitsuyasu Hasebe, Teiji Sota. Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles. Molecular Biology and Evolution. 2024. 41. msae110-msae110
Ryosuke Sato, Yoshihiko Nanasato, Naoki Takata, Soichiro Nagano, Eitaro Fukatsu, Takeshi Fujino, Katushi Yamaguchi, Yoshinari Moriguchi, Shuji Shigenobu, Yutaka Suzuki, et al. Efficient selection of a biallelic and nonchimeric gene-edited tree using Oxford Nanopore Technologies sequencing. Tree Physiology. 2023
Akiko Satake, Ryosuke Imai, Takeshi Fujino, Sou Tomimoto, Kayoko Ohta, Mohammad Na’iem, Sapto Indrioko, Widiyatno, Susilo Purnomo, Almudena Mollá-Morales, et al. Somatic mutation rates scale with time not growth rate in long-lived tropical trees. eLife. 2023
Hiroyuki Kakui, Tokuko Ujino-Ihara, Yoichi Hasegawa, Eriko Tsurisaki, Norihiro Futamura, Junji Iwai, Yuumi Higuchi, Takeshi Fujino, Yutaka Suzuki, Masahiro Kasahara, et al. A single-nucleotide substitution of CjTKPR1 determines pollen production in the gymnosperm plant Cryptomeria japonica. PNAS nexus. 2023. 2. 8. pgad236

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MISC (23)：

Fujino Takeshi, Yamaguchi Katsushi, Yokoyama Toshiyuki T, Hamanaka Toshiya, Harazono Yoritaka, Kamada Hiroaki, Kobayashi Wataru, Ihara Tokuko Ujino, Uchiyama Kentaro, Matsumoto Asako, et al. A whole-genome assembly of Japanese cedar (Cryptomeria japonica D. Don). The Japanese Forest Society Congress. 2023. 134. 371
清水佳奈, 坂本一憲, 笠原雅弘. アルゴリズムの頂が持つ力はいかに? -ゲノコン2021 開催記録-. 情報処理. 2022. 63. 7. none
角井宏行, 伊原徳子, 長谷川陽一, 釣崎恵里子, 二村典宏, 岩井淳治, 樋口有未, 藤野健, 鈴木穣, 笠原雅弘, et al. Identification of MALE STERILITY 4 gene in Japanese cedar. 育種学研究. 2022. 24
横山稔之, 坂本祥駿, 関真秀, 鈴木穣, 笠原雅弘. ゲノム構造の差異を可視化するグラフゲノムブラウザ. 可視化情報学会誌. 2020. 40. 156
笠原雅弘. Genome sequencing and analysis of Japanese cedar. 京都大学化学研究所スーパーコンピュータシステム研究成果報告書. 2019. 2018. 83-83

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Books (1)：

Large-scale genome sequence processing
Imperial College Press, Distributed by World Scientific 2006 ISBN:9781860946356

Lectures and oral presentations (9)：

分離集団の薄いショットガンシーケンシングによるシャジクモ遺伝学的地図の構築
(日本植物分類学会大会研究発表要旨集 2018)
ロングリードによるヒトゲノム構造多型検出に向けて
(日本生化学会大会(Web) 2017)
グラフゲノムブラウザ
(日本生化学会大会(Web) 2017)
カイコの雄化誘導遺伝子Mascの進化に迫る
(日本応用動物昆虫学会大会講演要旨 2016)
1分子シークエンシングによる非モデル生物の新規ゲノム解析
(日本動物学会大会予稿集 2014)

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Professional career (1)：

博士(科学) (東京大学)

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