Murakami Yoichi

ムラカミヨウイチ | Murakami Yoichi

Affiliation and department：
Job title： Professor
Homepage URL (1)： http://www.murakamilab.tuis.ac.jp

Research field (2)： Systems genomics , Biological, health, and medical informatics

Research keywords (4)： Bioinformatics , Protein-protein interactions , Machine Learning , Database

Research theme for competitive and other funds (6)：

2020 - 2023 Development of a self-monitoring system for "medical care with patients" by telenursing
2020 - 2023 Prediction of binding sites between proteins by deep learning, and development of the system to help facilitate target site selection
2019 - 2023 看護臨床判断を支援するAI活用に向けた新技術の創生
2019 - 2022 在宅医療を支える看護判断を導くAI構築と拡張知能(EI)の活用
2014 - 2017 Development of a sequence-based prediction method of interacting protein partners for drug target discovery

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Papers (24)：

Yoichi Murakami, Kenji Mizuguchi. Recent developments of sequence-based prediction of protein-protein interactions. Biophysical Reviews. 2022. 14. 6. 1393-1411
水野芳子, 西村あをい, 村上洋一, 前田はる香, 山浦那津子. 多様な施設で行う小児看護学実習の学びの特徴. 東京情報大学研究論集. 2022. 25. 2. 45-54
Akira Saito, Daiki Tsuchiya, Seiji Sato, Atsushi Okamoto, Yoichi Murakami, Kenji Mizuguchi, Hiroyuki Toh, Wataru Nemoto. Update of the GRIP web service. Journal of Receptors and Signal Transduction. 2020. 40. 4. 348-356
中野心太, 早稲田篤志, 村上洋一, 岸本頼紀, 花田真樹, 関口竜也, 折田彰, 布広永示. Development of Timeline-Based Event Log Visualization Function Using Traces of Unauthorized Access. 東京情報大学研究論集. 2020. 24. 1. 1-10
Yoichi Murakami. Study of Characterization of Promiscuous Binding Sites in Protein-Small Molecule Complexes. Proceedings of the 2019 6th International Conference on Bioinformatics Research and Applications. 2019

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MISC (6)：

Ziyi Lin, Yusuke Suzuki, Fumikazu Iseki, Yoichi Murakami. Implementation of real-time learning progress monitoring system using Jupyter - A new tool for teaching programming efficiently -. IEICE Technical Report (Web). 2022. 122. 191. 42-47
Yusuke SUZUKI, Ziyi LIN, Fumikazu ISEKI, Yoichi MURAKAMI. Real-time collection of execution logs and visualization of learning status on JupyterLab. IEICE Technical Report (Web). 2022. 121. 406. 54-58
村上洋一, 水口賢司. 【情報システム】インタラクトームレベルのデータセットを用いたタンパク質間相互作用予測とその応用. 東京情報大学研究論集. 2018. 22. 1. 63-74
村上洋一. 計算科学によるタンパク質間相互作用予測と創薬応用. 新・実学ジャーナル. 2018. 1+2月号. 1-2
Eiji Kanamori, Yuko Tsuchiya, Yoichi Murakami, Joy Sarmiento, Shide Liang, Daron Standley, Matsuyuki Shirota, Kengo Kinoshita, Haruki Nakamura. Prediction of Protein-Protein Complex Structures Using a Docking Server, surFit. PROTEIN SCIENCE. 2012. 21. 178-178

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Patents (1)：

Books (3)：

Education (3)：

Professional career (1)：

Work history (7)：

2024/04 - 現在 Tokyo University of Information Sciences Faculty of Informatics Professor
2019/04 - 現在 Tokyo University of Information Sciences Faculty of Informatics Department of Informatics Associate Professor
2017/04 - 2019/03 Tokyo University of Information Sciences Faculty of Informatics Department of Informatics Assistant professor
2015/04 - 2017/03 National Institutes of Biomedical Innovation, Health and Nutrition Bioinformatics Project
2012/04 - 2015/03 Tohoku University Graduate School of Information Science Postdoctoral Fellow

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Association Membership(s) (3)：

情報処理学会 , CHEM-BIO INFORMATICS SOCIETY , JAPANESE SOCIETY FOR BIOINFORMATICS

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