YAMAZAKI YOICHI

Research field (1)： Biophysics

Research theme for competitive and other funds (14)：

2023 - 2026 Time-Dependent Modulation of KaiC-KaiA/KaiB Binding Modes in the Autonomous Oscillation Process of the Kai System
2012 - 2016 Strucuter and Photochemical Reactions of Photoactive Yellow Proteins: Generality and diversity
2011 - 2014 Extraction and application of structural and functional elements of proteins.
2011 - 2013 Molecular mechanism for divergent interactions in PAS domain proteins
2008 - 2012 Development of model systems for intrinsically disordered protein and understanding of the role of fluctuation on molecular recognition and folding

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Papers (137)：

Yasumichi Takase, Yoichi Yamazaki, Yugo Hayashi, Sachiko Toma-Fukai, Hironari Kamikubo. Structure elements can be predicted using the contact volume among protein residues. Biophysics and Physicobiology. 2021. 18. 50-59
Suhyang Kim, Yusuke Nakasone, Akira Takakado, Yoichi Yamazaki, Hironari Kamikubo, Masahide Terazima. Wavelength-Dependent Photoreaction of PYP from Rhodobacter capsulatus. Biochemistry. 2020. 59. 51. 4810-4821
Jia-Siang Sum, Yoichi Yamazaki, Keito Yoshida, Kento Yonezawa, Yugo Hayashi, Mikio Kataoka, Hironari Kamikubo. Spectroscopic and structural characteristics of a dual-light sensor protein, PYP-phytochrome related protein. Biophysics and Physicobiology. 2020. 17. 0. 103-112
Mariko Yamaguchi, Emi Ohta, Takuya Muto, Takayoshi Watanabe, Takahiro Hohsaka, Yoichi Yamazaki, Hironari Kamikubo, Mikio Kataoka. Statistical description of the denatured structure of a single protein, staphylococcal nuclease, by FRET analysis. Biophysical Reviews. 2017. 2017
Kento Yonezawa, Nobutaka Shimizu, Kazuo Kurihara, Yoichi Yamazaki, Hironari Kamikubo, Mikio Kataoka. Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal. SCIENTIFIC REPORTS. 2017. 7. 9361

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MISC (3)：

Matsumoto Takahiro, Yamaguchi Mariko, Shiba Rumi, Kamikubo Hironari, Yamazaki Yoichi, Kataoka Mikio. Main-chain dynamics of staphylococcal nuclease by tryptophan triplet state lifetime. Meeting abstracts of the Physical Society of Japan. 2013. 68. 2. 339-339
Niimura, Nobutake Shimizu, Yoichi Yamazaki, Mikio Kataoka. Low -barrier hydrogen bond in photoactive yellow protein Shigeo Yamaguchi, Hironari Kamikubo, Kazuo Kurihara, Ryota Kuroki, Nobuo. PNAS. 2009. 106
Kubota Susumu, Hirano Satoshi, Nakagawa Hiroshi, Kamikubo Hironari, Yamaaaki Yoichi, Imamoto Yasushi, Kataoka Mikio. 27aPS-71 Structural stability of C-terminal deletion mutant of Staphylococcal Nuclease attributed by various solvents. Meeting abstracts of the Physical Society of Japan. 2002. 57. 1. 296-296

Lectures and oral presentations (93)：

Structure and interaction analysis of the complex molecular systems (GGA/Arf/MPR/Ub) involved in Clathrin-coated vesicles
(The 6th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions 2018)
Multiple phosphorylation and structural alteration of shootin1
(The 6th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions 2018)
複数の蛋白質複合体を含む多成分系平衡状態の構造解析
(第17回日本蛋白質科学会年会 2017)
Analysis of amyloid formation and inhibition mechanisms of human calcitonin by chimera calcitonin
(The 5th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions 2017)
An analysis of the interaction of gga with ubiquitin by using titration saxs measurement
(The 5th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions 2017)

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