Kawaji Hideya

Affiliation and department：
Job title： Associate Center Director
Other affiliations (1)：

RIKEN RIKEN Center for Integrative Medical Sciences

Research field (1)： Systems genomics

Research theme for competitive and other funds (7)：

2021 - 2024 Evaluating the role of cis-regulatory tandem DNA repeats in human disease and evolution
2020 - 2024 Elucidation for genetic regulation of enhancer expression and interpretation of genetic architecture in autoimmune diseases
2016 - 2021 Reverse engineering of transcriptional regulatory regions through data modeling of transcription initiation activities
2016 - 2018 Development of a genomics data sharing platform in Asia
2015 - 2018 Identification of biomarkers to diagnose lymph node metastasis based on gene expression patterns in primary lesion of endometrial carcinoma

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Papers (165)：

Francisco J Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell-Sala, Brian Williams, Jane E Loveland, Maite De María, Matthew S Adams, Gabriela Balderrama-Gutierrez, et al. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. Nature methods. 2024
Kosuke Yamazaki, Tomohiro Iguchi, Yutaka Kanoh, Kazuto Takayasu, Trinh Thi To Ngo, Ayaka Onuki, Hideya Kawaji, Shunji Oshima, Tomomasa Kanda, Hisao Masai, et al. Homologous recombination contributes to the repair of acetaldehyde-induced DNA damage. Cell cycle (Georgetown, Tex.). 2024. 1-16
Yuta Ueno, Emiko Yoshida, Shuko Nojiri, Tomoyasu Kato, Takashi Ohtsu, Toshiyuki Takeshita, Shunji Suzuki, Hiroshi Yoshida, Ken Kato, Masayoshi Itoh, et al. Use of clinical variables for preoperative prediction of lymph node metastasis in endometrial cancer. Japanese journal of clinical oncology. 2024. 54. 1. 38-46
Takuya Kuroda, Satoshi Yasuda, Satoko Matsuyama, Takumi Miura, Rumi Sawada, Akifumi Matsuyama, Yumiko Yamamoto, Masaki Suimye Morioka, Hideya Kawaji, Takeya Kasukawa, et al. ROR2 expression predicts human induced pluripotent stem cell differentiation into neural stem/progenitor cells and GABAergic neurons. Scientific reports. 2024. 14. 1. 690-690
Akari Nakamura, Seiichiro Sakai, Yoshitaka Taketomi, Jun Tsuyama, Yoshimi Miki, Yuichiro Hara, Nobutaka Arai, Yuki Sugiura, Hideya Kawaji, Makoto Murakami, et al. PLA2G2E-mediated lipid metabolism triggers brain-autonomous neural repair after ischemic stroke. Neuron. 2023. 111. 19. 2995-3010

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MISC (38)：

粕川雄也, WALKER Scott, 長谷川哲, THALHATH Nishad, 信定知江, 沖真弥, 高田豊行, 桝屋啓志, 川路英哉. INTRARED: a data platform for transcriptional regulation that integrates cis-regulatory elements, trans-factors, and epigenome information. 日本分子生物学会年会プログラム・要旨集(Web). 2023. 46th
富田康文, 鈴木一浩, 田畑光一, 川路英哉, 宮下光弘, 鳥海和也, 山崎修道, 安藤俊太郎, 笠井清登, 西田淳志, et al. 尿中エキソソーム含有miRNAによる精神病様体験の持続の予測. 日本生化学会大会プログラム・講演要旨集. 2022. 95回. 2P-315
吉川茜, 久島周, 宮下光弘, 鈴木浩一, 鳥海和也, 堀内泰江, 川路英哉, 瀧澤俊也, 尾崎紀夫, 糸川昌成, et al. 糖化ストレスを伴う統合失調症におけるIMMP2L遺伝子欠失-臨床特徴と新規治療法開発の可能性. 精神神経学雑誌. 2021. 2021特別号. S573-S573
遺伝子モデルと核酸医薬創薬に資するゲノム・RNAデータベース. 2020. 78. 2
廣瀬直毅, 廣瀬直毅, 依馬正次, 佐々木えりか, GUSEV Oleg, GUSEV Oleg, 河合純, 村川泰裕, 村川泰裕, 川路英哉, et al. 非ヒト霊長類のトランスクリプトーム・アトラス. 日本分子生物学会年会プログラム・要旨集(Web). 2020. 43rd

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Books (1)：

RとBioconductorを用いたバイオインフォマティクス
丸善出版 2012 ISBN:9784621062500

Lectures and oral presentations (18)：

血管生検を用いた網羅的トランスクリプトーム解析による巨細胞性動脈炎の分子病態の解明
(第46回日本分子生物学会年会 2023年12月 2023)
Unraveling the genomic code in gene regulation
(TMIMS International Symposium on Cells and Chromosomes 2023)
転写制御理解のためのゲノムワイドなシスエレメントデータベースfanta.bio
(日本生化学会大会(Web) 2023)
Genomics resource of non human primates: recent updates and future perspective
(43th annual meeting of the molecular biology society of Japan, 2020)
Functional Annotation of Non-Coding Genomic Regions of Non-Human Primates
(International Plant & Animal Genome XXVIII 2020)

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Work history (1)：

2023/04 - 現在 RIKEN RIKEN Center for Integrative Medical Sciences

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