Rchr
J-GLOBAL ID：202001000612096810
Update date: Apr. 23, 2024
Shiomi Akifumi
シオミ アキフミ | Shiomi Akifumi
Affiliation and department：
Job title：
Special Postdoctoral Researcher
Research field (3)：
Bioorganic chemistry
, Cell biology
, Biophysics
Research keywords (4)：
Single-cell RNA sequencing
, phospholipids
, plasma membrane
, mechanical properties
Research theme for competitive and other funds (5)：
- 2023 - 2025 細胞の遺伝子発現と力学的境界条件が織りなすオルガノイドの生体秩序
- 2022 - 2025 1細胞の機械特性と遺伝子発現解析の統合
- 2021 - 2024 脂質分子動態に基づく骨格筋再生機構の全容解明
- 2021 - 2024 ナノ電気穿孔を用いた1細胞ダイナミクス計測法の創成
- 2017 - 2020 The unique membrane formation and remarkable deformability in insect cell
Papers (5)：
-
Misa Minegishi, Takahiro Kuchimaru, Kaori Nishikawa, Takayuki Isagawa, Satoshi Iwano, Kei Iida, Hiromasa Hara, Shizuka Miura, Marika Sato, Shigeaki Watanabe, et al. Secretory GFP reconstitution labeling of neighboring cells interrogates cell-cell interactions in metastatic niches. Nature Communications. 2023. 14. 1
-
Kotaro Hirano, Masaki Tsuchiya, Akifumi Shiomi, Seiji Takabayashi, Miki Suzuki, Yudai Ishikawa, Yuya Kawano, Yutaka Takabayashi, Kaori Nishikawa, Kohjiro Nagao, et al. The mechanosensitive ion channel PIEZO1 promotes satellite cell function in muscle regeneration. Life Science Alliance. 2022. 6. 2. e202201783-e202201783
-
Akifumi Shiomi, Kohjiro Nagao, Nobuhiro Yokota, Masaki Tsuchiya, Utako Kato, Naoto Juni, Yuji Hara, Masayuki X. Mori, Yasuo Mori, Kumiko Ui-Tei, et al. Extreme deformability of insect cell membranes is governed by phospholipid scrambling. Cell Reports. 2021. 35. 10. 109219-109219
-
Akifumi Shiomi, Kohjiro Nagao, Hisae Kasai, Yuji Hara, Masato Umeda. Changes in the physicochemical properties of fish cell membranes during cellular senescence. Bioscience, biotechnology, and biochemistry. 2020. 84. 3. 583-593
-
Masaki Tsuchiya, Yuji Hara, Masaki Okuda, Karin Itoh, Ryotaro Nishioka, Akifumi Shiomi, Kohjiro Nagao, Masayuki Mori, Yasuo Mori, Junichi Ikenouchi, et al. Cell surface flip-flop of phosphatidylserine is critical for PIEZO1-mediated myotube formation. Nature communications. 2018. 9. 1. 2049-2049
MISC (3)：
-
Akifumi Shiomi, Kohjiro Nagao, Masato Umeda. Regulation of cell deformability by phospholipid transport. 2022. 94. 1. 108-111
-
Akifumi Shiomi, Kohjiro Nagao, Masato Umeda. リン脂質スクランブラーゼにより昆虫細胞は高い変形能を獲得する. 2021. 39. 18. 2928-2931
-
Kohjiro Nagao, Akifumi Shiomi, Masato Umeda. Phospholipid transporters in Drosophila melanogaster. 2016. 67. 3. 247-251
Books (3)：
-
次世代バイオテクノロジーへの招待
大学教育出版 2021 ISBN:9784866921662
-
生命科学が解き明かす食と健康
大学教育出版 2020 ISBN:9784866920726
-
生命科学が解き明かす体の秘密
大学教育出版 2017 ISBN:9784864294553
Lectures and oral presentations (15)：
-
Combined Analysis of Cell Mechanics and Transcriptome
(IEEE-NEMS 2024 2024)
-
Combined analysis of mechanical properties and transcriptome in thousands of single cells
(The 61th Annual Meeting of the Biophysical Society of Japan 2023)
-
ELASTOMICS: HIGH-THROUGHPUT MECHANICAL PHENOTYPING AND TRANSCRIPTOMICS OF SINGLE CELLS
(microTAS 2023 2023)
-
ELASTomics: Combined analysis of mechanical phenotype of cellular surface and transcriptome at single-cell resolution
(2023 Physics and Chemistry of Microfluidics Gordon Research Conference 2023)
-
ELASTomics: Combined analysis of mechanical phenotype of cellular surface and transcriptome at single-cell resolution
(2023 Physics and Chemistry of Microfluidics Gordon Research Seminar 2023)
ｍore...
Education (2)：
- 2015 - 2020 Kyoto University Graduate School of Engineering Department of Synthetic Chemistry and Biological Chemistry
- 2011 - 2015 Kyoto University Faculty of Engineering Department of Industrial Chemistry
Professional career (1)：
- Doctor of Philosophy in Engineering (Kyoto University)
Work history (4)：
- 2022/04 - 現在 RIKEN Microfluidics RIKEN Hakubi Research Team Special Postdoctoral Researcher
- 2023/04 - 2024/03 University of California, Los Angeles Bioengineering Visiting scholar
- 2020/04 - 2022/03 RIKEN Microfluidics RIKEN Hakubi Research Team postdoctoral Researcher
- 2017/04 - 2020/03 Kyoto University Graduate School of Engineering
Awards (5)：
- 2023/03 - Sysmex Sysmex award
- 2022/01 - The Japan Society of Mechanical Engneers Micro-Nano Engineering Excellent Paper Certificate of Merit
- 2021/11 - The Biophysical Society of Japan Early Career Presentation Award
- 2019/09 - The Biophysical Society of Japan Student Presentation Award
- 2019/09 - The Biochemical Society Young Scientist Award
Association Membership(s) (4)：
The Biophysical Society of Japan
, The Japanese Conference on the Biochemistry of Lipids
, The Biochemical Society
, The Japan Society of Mechanical Engneers
