Rchr
J-GLOBAL ID：202001000612096810
Update date: Sep. 23, 2024
Shiomi Akifumi
シオミ アキフミ | Shiomi Akifumi
Affiliation and department：
Job title：
Special Postdoctoral Researcher
Research field (3)：
Bioorganic chemistry
, Cell biology
, Biophysics
Research keywords (4)：
Single-cell RNA sequencing
, phospholipids
, plasma membrane
, Cell mechanics
Research theme for competitive and other funds (7)：
- 2024 - 2028 Analysis of age-related organismal transformations through cell mechanics
- 2023 - 2025 細胞の遺伝子発現と力学的境界条件が織りなすオルガノイドの生体秩序
- 2022 - 2025 1細胞の機械特性と遺伝子発現解析の統合
- 2021 - 2024 脂質分子動態に基づく骨格筋再生機構の全容解明
- 2021 - 2024 ナノ電気穿孔を用いた1細胞ダイナミクス計測法の創成
- 2023 - 2024 細胞の変形能と遺伝子発現の統合解析
- 2017 - 2020 The unique membrane formation and remarkable deformability in insect cell
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Papers (6)：
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Akifumi Shiomi, Taikopaul Kaneko, Kaori Nishikawa, Arata Tsuchida, Takashi Isoshima, Mayuko Sato, Kiminori Toyooka, Kentaro Doi, Hidekazu Nishikii, Hirofumi Shintaku. High-throughput mechanical phenotyping and transcriptomics of single cells. Nature communications. 2024. 15. 1. 3812-3812
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Misa Minegishi, Takahiro Kuchimaru, Kaori Nishikawa, Takayuki Isagawa, Satoshi Iwano, Kei Iida, Hiromasa Hara, Shizuka Miura, Marika Sato, Shigeaki Watanabe, et al. Secretory GFP reconstitution labeling of neighboring cells interrogates cell-cell interactions in metastatic niches. Nature Communications. 2023. 14. 1
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Kotaro Hirano, Masaki Tsuchiya, Akifumi Shiomi, Seiji Takabayashi, Miki Suzuki, Yudai Ishikawa, Yuya Kawano, Yutaka Takabayashi, Kaori Nishikawa, Kohjiro Nagao, et al. The mechanosensitive ion channel PIEZO1 promotes satellite cell function in muscle regeneration. Life Science Alliance. 2022. 6. 2. e202201783-e202201783
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Akifumi Shiomi, Kohjiro Nagao, Nobuhiro Yokota, Masaki Tsuchiya, Utako Kato, Naoto Juni, Yuji Hara, Masayuki X. Mori, Yasuo Mori, Kumiko Ui-Tei, et al. Extreme deformability of insect cell membranes is governed by phospholipid scrambling. Cell Reports. 2021. 35. 10. 109219-109219
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Akifumi Shiomi, Kohjiro Nagao, Hisae Kasai, Yuji Hara, Masato Umeda. Changes in the physicochemical properties of fish cell membranes during cellular senescence. Bioscience, biotechnology, and biochemistry. 2020. 84. 3. 583-593
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MISC (3)：
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Akifumi Shiomi, Kohjiro Nagao, Masato Umeda. Regulation of cell deformability by phospholipid transport. 2022. 94. 1. 108-111
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Akifumi Shiomi, Kohjiro Nagao, Masato Umeda. リン脂質スクランブラーゼにより昆虫細胞は高い変形能を獲得する. 2021. 39. 18. 2928-2931
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Kohjiro Nagao, Akifumi Shiomi, Masato Umeda. Phospholipid transporters in Drosophila melanogaster. 2016. 67. 3. 247-251
Books (3)：
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次世代バイオテクノロジーへの招待
大学教育出版 2021 ISBN:9784866921662
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生命科学が解き明かす食と健康
大学教育出版 2020 ISBN:9784866920726
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生命科学が解き明かす体の秘密
大学教育出版 2017 ISBN:9784864294553
Lectures and oral presentations (23)：
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Integration of mechanical phenotyping and transcriptomics by ELASTomics and MECHANOmics
(The 52nd Naito Conference 2024)
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Combined analysis of static and dynamic cell-mechanics with unbiased transcriptomics for thousands of single cells
(IUPAB2024 2024)
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Combined analysis of static and dynamic cell mechanics with unbiased transcriptomics for thousands of single cells
(International Symposium on Mechanical control of biological self-organization 2024)
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Combined Analysis of Cell Mechanics and Transcriptome
(IEEE-NEMS 2024 2024)
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Combined analysis of mechanical properties and transcriptome in thousands of single cells
(The 61th Annual Meeting of the Biophysical Society of Japan 2023)
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Education (2)：
- 2015 - 2020 Kyoto University Graduate School of Engineering Department of Synthetic Chemistry and Biological Chemistry
- 2011 - 2015 Kyoto University Faculty of Engineering Department of Industrial Chemistry
Professional career (1)：
- Doctor of Philosophy in Engineering (Kyoto University)
Work history (4)：
- 2022/04 - 現在 RIKEN Microfluidics RIKEN Hakubi Research Team Special Postdoctoral Researcher
- 2023/04 - 2024/03 University of California, Los Angeles Bioengineering Visiting scholar
- 2020/04 - 2022/03 RIKEN Microfluidics RIKEN Hakubi Research Team postdoctoral Researcher
- 2017/04 - 2020/03 Kyoto University Graduate School of Engineering
Committee career (1)：
- 2024/04 - 現在 The Biophysical Society of Japan Field Expert Committee Members
Awards (7)：
- 2024/08 - JST-CREST「多細胞」 JST-CREST 多細胞 若手の会 2024 YORC発表賞
- 2024/06 - IUPAB2024 IUPAB2024 Student and Early Career Researcher Poster Award
- 2023/03 - Sysmex Sysmex award
- 2022/01 - The Japan Society of Mechanical Engneers Micro-Nano Engineering Excellent Paper Certificate of Merit
- 2021/11 - The Biophysical Society of Japan Early Career Presentation Award
- 2019/09 - The Biophysical Society of Japan Student Presentation Award
- 2019/09 - The Biochemical Society Young Scientist Award
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Association Membership(s) (4)：
The Japan Society of Mechanical Engneers
, The Biophysical Society of Japan
, The Japanese Conference on the Biochemistry of Lipids
, The Biochemical Society
