Yamaguchi Ryo

ヤマグチリョウ | Yamaguchi Ryo

Affiliation and department：
Job title： Assistant Professor
Homepage URL (1)： https://www.ryamaguchilab.com/

Research field (3)： Evolutionary biology , Biodiversity and systematics , Ecology and environmental science

Research keywords (9)： Population dynamics , Species diversity , Genetic drift , Reproductive isolation , Extinction , Adaptation , Evolution experiment , Speciation , Mathematical model

Research theme for competitive and other funds (8)：

2024 - 2028 An Integrated Theory of Speciation Cycles and Species Diversity through the Lens of Ecology
2023 - 2026 Prediction on infectious disease control driven SARS-CoV-2 evolution for living with COVID-19
2022 - 2025 Establishment of eco-evolutionary experiment controlled by Real-Time AI
2021 - 2024 生殖隔離における種間非対称性の進化生態学的起源
2020 - 2022 Relative importance of ecological speciation versus mutation- order speciation using a fitness landscape model

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Papers (30)：

Rishi De-Kayne, Rowan Schley, Julia M I Barth, Luke C Campillo, Catalina Chaparro-Pedraza, Jahnavi Joshi, Walter Salzburger, Bert Van Bocxlaer, Darko D Cotoras, Carmelo Fruciano, et al. Why Do Some Lineages Radiate While Others Do Not? Perspectives for Future Research on Adaptive Radiations. Cold Spring Harbor perspectives in biology. 2024
Sean Stankowski, Asher D Cutter, Ina Satokangas, Brian A Lerch, Jonathan Rolland, Carole M Smadja, J Carolina Segami Marzal, Christopher R Cooney, Philine G D Feulner, Fabricius Maia Chaves Bicalho Domingos, et al. Toward the integration of speciation research. Evolutionary Journal of the Linnean Society. 2024. 3. 1-24
Junya Sunagawa, Hyeongki Park, Kwang Su Kim, Ryo Komorizono, Sooyoun Choi, Lucia Ramirez Torres, Joohyeon Woo, Yong Dam Jeong, William S. Hart, Robin N. Thompson, et al. Isolation may select for earlier and higher peak viral load but shorter duration in SARS-CoV-2 evolution. Nature Communications. 2023. 14. 1
Daiki Kumakura, Ryo Yamaguchi, Akane Hara, Shinji Nakaoka. Disentangling the growth curve of microbial culture. Journal of Theoretical Biology. 2023. 573. 111597-111597
Junya Sunagawa, Ryo Komorizono, Hyeongki Park, William S. Har, Robin, N. Thompson, Akiko Makino, Keizo Tomonaga, Shingo Iwami, Ryo Yamaguchi. Contact-number-driven virus evolution: A multi-level modeling framework for the evolution of acute or persistent RNA virus infection. PLOS Computational Biology. 2023. 19. 5. e1011173-e1011173

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MISC (8)：

山口諒. 固有種数でみる東南アジア島嶼部のチョウ類多様性-Butterfly species diversity : Distribution of endemic species in Malay Archipelago. 昆虫と自然 / 昆虫と自然編集委員会編. 2023. 58. 4. 31-34
山口諒. チョウの生殖隔離と種分化-Reproductive isolation and speciation in butterflies. 昆虫と自然 / 昆虫と自然編集委員会編. 2022. 57. 8. 30-34
山口諒. スラウェシの固有な蝶相-The endemic butterfly fauna of Sulawesi-特集東南アジアの蝶学. 昆虫と自然 / 昆虫と自然編集委員会編. 2021. 56. 4. 巻頭2p,13-17
山口諒. 形質のモジュール性が適応度地形における進化に及ぼす影響-第15回生物数学の理論とその応用 : 次世代の数理科学への展開. 数理解析研究所講究録. 2020. 2165. 59-63
Yamaguchi Ryo, Iwasa Yoh. Speciation despite gene flow when genetic incompatibility accumulates continuously (Theory of Biomathematics and Its Applications XI). RIMS Kokyuroku. 2015. 1937. 56-63

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Books (2)：

How do new species arise?
Kyoritsu Shuppan 2024 ISBN:9784320009424
How and why species multiply
Kyoritsu Shuppan Co., Ltd. 2017 ISBN:9784320057845

Lectures and oral presentations (23)：

Exploring virus evolution and adaptation through genetic algorithms on fitness landscapes
(KSMB-SMB conference 2024)
ダイナミックな進化過程の数理解析: 環境適応から種分化まで
(第1回生物の基礎探求会 2024)
The phoenix hypothesis of speciation: reproductive isolation among populations experiencing extinction risk
(Symposium “Genomics of adaptation and speciation” at The 3rd AsiaEvo Conference 2023)
種分化サイクルにおける個体群動態-種多様性創出の理解に向けて-
(第39回個体群生態学会大会 2023)
Integrating speciation over spatial temporal scales
(Integration Of Speciation Research (IOS) workshop 2023)

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Education (2)：

2012 - 2017 Kyushu University Graduate School of Systems Life Sciences
2008 - 2012 Kyushu University Department of Biological Sciences, Faculty of Sciences

Professional career (1)：

Ph.D. (Kyushu University)

Work history (4)：

2020/04 - 現在 Hokkaido University Faculty of Advanced Life Science Division of Functional Life Sciences Assistant Professor
2022/02 - 2024/01 The University of British Columbia
2017/04 - 2020/03 Tokyo Metropolitan University
2014/04 - 2017/03 Kyushu University Graduate School of Systems Life Sciences

Awards (4)：

2024/08 - 日本進化学会第24回日本進化学会研究奨励賞
2023/10 - 個体群生態学会第16回個体群生態学会奨励賞
2022/09 - Japanese Society for Mathematical Biology The 17th JSMB Early Career Award
2019/03 - The Ecological Society of Japan The 7th Young Scholar Award of the Ecological Society of Japan (ESJ Suzuki Award)

Association Membership(s) (5)：

Society for the Study of Evolution , 日本進化学会 , 日本数理生物学会 , 個体群生態学会 , 日本生態学会

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