Rchr
J-GLOBAL ID：202101020004016887   Update date: Oct. 07, 2024

Kuroda Shinya

クロダ シンヤ | Kuroda Shinya
Affiliation and department：
The University of Tokyo Graduate School of Science Department of Biological Sciences

About The University of Tokyo Graduate School of Science Department of Biological Sciences


Job title： Professor
Research field  (3)： Medical biochemistry ,  Systems genomics ,  Systems genomics
Research keywords  (2)： systems biology ,  Trans-omics
Research theme for competitive and other funds  (29)：
  • 2023 - 2028 冬眠生物学2.0 総括班
  • 2021 - 2026 時空間トランスオミクスを用いた多細胞・臓器連関代謝制御の解明
  • 2021 - 2024 Information coding based in cell-to-cell variability
  • 2017 - 2022 Metabolic adaptation of type 2 diabetes
  • 2017 - 2022 Trans-omic analysis of metabolic adaptation
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Papers (121)：
  • Yifei Pan, Atsushi Hatano, Satoshi Ohno, Keigo Morita, Toshiya Kokaji, Yunfan Bai, Hikaru Sugimoto, Riku Egami, Akira Terakawa, Dongzi Li, et al. Time and dose selective glucose metabolism for glucose homeostasis and energy conversion in the liver. npj Systems Biology and Applications. 2024. 10. 1
  • Suguru Fujita, Ken-ichi Hironaka, Yasuaki Karasawa, Shinya Kuroda. Model selection reveals selective regulation of blood amino acid and lipid metabolism by insulin in humans. iScience. 2024. 109833-109833
  • Yunfan Bai, Keigo Morita, Toshiya Kokaji, Atsushi Hatano, Satoshi Ohno, Riku Egami, Yifei Pan, Dongzi Li, Katsuyuki Yugi, Saori Uematsu, et al. Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity. iScience. 2024. 27. 3. 109121-109121
  • Hideki Maehara, Toshiya Kokaji, Atsushi Hatano, Yutaka Suzuki, Masaki Matsumoto, Keiichi I. Nakayama, Riku Egami, Takaho Tsuchiya, Haruka Ozaki, Keigo Morita, et al. DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle. Scientific Reports. 2023. 13. 1
  • Yuki Ito, Shinsuke Uda, Toshiya Kokaji, Akiyoshi Hirayama, Tomoyoshi Soga, Yutaka Suzuki, Shinya Kuroda, Hiroyuki Kubota. Comparison of hepatic responses to glucose perturbation between healthy and obese mice based on the edge type of network structures. Scientific reports. 2023. 13. 1. 4758-4758
ｍore...
MISC (22)：
  • 小鍛治 俊也, 幡野 敦, 柚木 克之, 黒田 真也. 【マルチオミクスを使って得られた最新知見 糖尿病・がん・腸内細菌研究における実例と解析法】マウス肝臓における肥満特異的な代謝制御トランスオミクスネットワーク構築. 実験医学. 2020. 38. 8. 1289-1294
  • Katsuyuki Yugi, Satoshi Ohno, James R. Krycer, David E. James, Shinya Kuroda. Rate-oriented trans-omics: integration of multiple omic data on the basis of reaction kinetics. Current Opinion in Systems Biology. 2019. 15. 109-120
  • Takumi Wada, Mitsutaka Wataya, Masashi Fujii, Ken-ichi Hironaka, Miki Eto, Shinsuke Uda, Daisuke Hoshino, Katsuyuki Kunida, Haruki Inoue, Hiroyuki Kubota, et al. Single-cell information analysis reveals small intra- and large intercellular variations increase cellular information capacity. bioRxiv. 2019
  • Katsuyuki Yugi, Shinya Kuroda. Metabolism as a signal generator across trans-omic networks at distinct time scales. Current Opinion in Systems Biology. 2018. 8. 59-66
  • Katsumi Konishi, Masashi Fujii, Katsuyuki Kunida, Shinsuke Uda, Shinya Kuroda. Matrix rank minimization approach to signal recovery and nonlinear function estimation for nonlinear ARX model with input nonlinearity. 2017 Asian Control Conference, ASCC 2017. 2018. 2018-. 1428-1431
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Lectures and oral presentations  (2)：
  • Transomic network analysis of glucose metabolism and its dysfunction associated with obesity
    (2023 5th MHRC Symposium at SIMS 2023)
  • トランスオミクスによる肝臓での糖応答システムの解析
    (東海糖尿病代謝連携懇話会学術講演会 2023)
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