Rchr
J-GLOBAL ID：202401019278881448   Update date: Nov. 15, 2024

Ueda Hiroki

ウエダ ヒロキ | Ueda Hiroki
Affiliation and department：
The University of Tokyo Research Center for Advanced Science and Technology

About The University of Tokyo Research Center for Advanced Science and Technology


Job title： Project apointed lectuler
Homepage URL  (1)： http://www.biods.rcast.u-tokyo.ac.jp/
Research field  (2)： Systems genomics ,  Genomics
Research keywords  (5)： がんゲノミクス ,  BIGDATA Analysis ,  Bioinformatics ,  nanopore sequencer ,  RNA modification
Research theme for competitive and other funds  (10)：
  • 2024 - 2029 A Study on Elucidating Obesity and Lifestyle Diseases through the Epigenome-RNA Modification Axis
  • 2024 - 2028 化学修飾を含むmRNA配列設計の基盤技術
  • 2022 - 2027 先端的1細胞オミックス・エピトランスクリプトーム解析の支援と高度化
  • 2021 - 2025 Elucidation of mRNA dysregulation in hepatocellular carcinoma using a novel mRNA methylome method
  • 2024 - 2025 新規創薬標的探索のためのウィルスRNA修飾解析
Show all
Papers (30)：
  • Feifei Wei, Taku Kouro, Yuko Nakamura, Hiroki Ueda, Susumu Iiizumi, Kyoko Hasegawa, Yuki Asahina, Takeshi Kishida, Soichiro Morinaga, Hidetomo Himuro, et al. Enhancing Mass spectrometry-based tumor immunopeptide identification: machine learning filter leveraging HLA binding affinity, aliphatic index and retention time deviation. Computational and Structural Biotechnology Journal. 2024
  • Boyi Yu, Genta Nagae, Yutaka Midorikawa, Kenji Tatsuno, Bhaskar Dasgupta, Hiroyuki Aburatani, Hiroki Ueda. m6ATM: a deep learning framework for demystifying the m6A epitranscriptome with Nanopore long-read RNA-seq data. Briefings in Bioinformatics. 2024
  • Taijun Hana, Akitake Mukasa, Masashi Nomura, Genta Nagae, Shogo Yamamoto, Kenji Tatsuno, Hiroki Ueda, Shiro Fukuda, Takayoshi Umeda, Shota Tanaka, et al. AB019. Detailed analysis of DNA hydroxymethylation observed with the malignant progression of IDH-mutant gliomas. Chinese clinical oncology. 2024. 13. Suppl 1. AB019
  • Taijun Hana, Akitake Mukasa, Masashi Nomura, Genta Nagae, Shogo Yamamoto, Kenji Tatsuno, Hiroki Ueda, Shiro Fukuda, Takayoshi Umeda, Shota Tanaka, et al. Region-specific DNA hydroxymethylation along the malignant progression of IDH-mutant gliomas. Cancer science. 2024. 115. 5. 1706-1717
  • Hiroki Ueda, Bhaskar Dasgupta, Bo-Yi Yu. RNA Modification Detection Using Nanopore Direct RNA Sequencing and nanoDoc2. Methods in molecular biology (Clifton, N.J.). 2023. 2632. 299-319
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MISC (2)：
  • 山本 竜児, 溝上 敦, 山本 尚吾, 上田 宏生, 辰野 健二, 油谷 浩幸, 穴井 元暢, 児玉 龍彦, 田中 十志也. アンドロゲン非依存性LNCaP亜株のスプライシング異常について RNA-seq解析からみたアンドロゲン受容体およびクロマチン因子の異常. 泌尿器外科. 2016. 29. 8. 1229-1233
  • Kazutaka Fukumura, Masahito Kawazu, Shinya Kojima, Toshihide Ueno, Eirin Sai, Manabu Soda, Hiroki Ueda, Takahiko Yasuda, Hiroyuki Yamaguchi, Jeunghun Lee, et al. Genomic characterization of primary central nervous system lymphoma. Acta Neuropathologica. 2016. 131. 6. 865-875
Patents (1)：
  • Device, method, and program for analyzing nucleic acid base sequences and base modifications
Books (3)：
  • 月間「細胞」2021年12月号 エピトランスクリプトミクス
    ニューサイエンス社 2021
  • ロングリードWET&DRY解析ガイド : シークエンスをもっと自由に! : リピート配列から構造変異、ダイレクトRNA、de novoアセンブリまで、研究の可能性をグンと広げる応用自在な最新技術 : どこでも、誰でも、今日から使える!
    羊土社 2021 ISBN:9784758122535
  • 個別化医療を拓くがんゲノム研究 : 解き明かされるがんの本質と分子診断・治療応用への展開
    羊土社 2014 ISBN:9784758103404
Lectures and oral presentations  (2)：
  • Detecting of RNA modification using nanopore sequencer and nanoDoc
    (Nanopore Day Tokyo 2022 2022)
  • RNA modification detection with nanoDoc
    (Virtual Nanopore Day Japan 2021)
Association Membership(s) (3)：
The RNA Society of Japan ,  The Japanese Cancer Association ,  The Molecular Biology Society of Japan
※ Researcher’s information displayed in J-GLOBAL is based on the information registered in researchmap. For details, see here.

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