- 2020 - 2023 Establishing parameter estimation theory of stochastic differential equations for advanced modeling of life systems
- 2017 - 2021 Establishing statistical inference theory for bio-systems and biological control theory using control engineering
- 2016 - 2021 Platform for Advanced Genome Science
- 2016 - 2018 Establishing statistical inference theory for differential equations using sparse modeling techniques
- 2015 - 2017 RNA結合タンパク質結合サイト周辺のRNA構造モチーフ発見とデータベース開発
- 2013 - 2017 A population genetics analysis of RNA secondary structures
- 2013 - 2016 がん進行予測のための、がんゲノム進化シミュレーション
- 2010 - 2013 Exhaustive prediction of microRNAs, snoRNAs and their targets
- 2009 - 2010 Secondary structure evolution of Alu sequences in the human genome
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